Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1390 ATGGATTCGATGGACATCGTTGGGAAATCAAAGGAAGATGCTTCCCTTCCTAAAGCAACTATGACAAAAATTATTAAAGAGATGTTACCCCCTGATGTACGTGTTGCAAGAGATGCACAAGATCTATTGATTGAATGTTGTGTCGAGTTTATAAACCTTGTTTCATCGGAGTCCAATGATGTCTGTAATAGAGAGGATAAAAGGACAATTGCACCAGAGCATGTATTGAAGGCTTTACAGGTTCTTGGATTCAGTGAGTACATTGAGGAAGTTTATGCAGCATATGAGCAGCATAGGATTGAGACCAATCAGGACTCTTTAAGGGCTGGCAAGTGGAGCAATGGAGCTGAGATGACTGAGGAGGAAGCATTGCTGGAGCAGCAAAGGATGTTTGCAGAGGCGCGTGCTAGAATGAATGGTGGGGCCATTGCTTCCAAGCAGCCGGATGCTGGCCAAACTTTAGATAGCTAA 471 0.4374 MDSMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNREDKRTIAPEHVLKALQVLGFSEYIEEVYAAYEQHRIETNQDSLRAGKWSNGAEMTEEEALLEQQRMFAEARARMNGGAIASKQPDAGQTLDS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1390 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Prci9g1390 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Prci9g1390 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Prci9g1390 156 Gene3D Histone, subunit A 4 143 IPR009072 GO:0046982
Prci9g1390 156 FunFam Negative cofactor 2 beta 6 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1390 Prci-Chr9 27281677 27285651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1390 1 153 CCAAT-DR1 Transcription Factor Family AT5G23090 84.314 9.32e-94 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Prci9g1390 CBFD_NFYB_HMF 7.7e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1390 K21751 - gmx:100807912 284.263