Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1352 ATGACGATTGACGACGAGAGCTCCATTTACGTTGGAGGTCTTCCCTACGATGCCACCGAAGATACCATCCGCTCCGTCTTTGATCTGTATGGCGCCATTCTTGATGTCAAGATTATTAATGATATCCGGACTAGGGGCAAGTGCTATTGTTTTGTAACTTTCACAAATCCTCGATCAGCGGTTGATGCAATCAATGACATGAATGGCAGGACCATTGATGGGCGTGTGGTTAAAGTAAATGGGGTGAGGACTCGAGGTGGAAGATCAAATTTTGGCAGAGAACTTATTCATCATAATACTGATAGGAATGGAGATTGGGATCGTGGTAGAGATCGAGACCGAGATTATAACCATGACAGGGACAGGCACAGGGATCGGAATAGTGGTTGGTCTCACGAGCGTGATAGGTCTCGAGAGCGTGACCAGTCTCGAGACTTTGAGCATGAAGGGGATGGAAGATATGACCACACACATTATCATGATCAAGAAAGAGAACCTTTGCATGTCAAAGATCGAAGTCAAGAGAGACATCTGGCAGATGATGAACAAGAACACAGCAAAGTACATGGTCAAGCTACACATAGAGACTATAACCTGGATTTTGATACGGACAGGAAGATGGACAGAACTTATGATCCTGACAGAAGTTTTGATGGGGAAAGAAATGAACACTCAAGGAGAAACAATGGATTGAATATTACAAAACAACCTAACATGGATTTTTCTTCAGACTCTAATGGTAACCGCAATGATGAGATTGCAGATCAATTAGAGAGGTCAACTGAAAGGCTTGGTCAACTGAAAAAAGAGGTCTCTCAGTTGAAAGAGAAGTTACAAGAGAAACGACAACTTGTACCGGAGTTACAAAAGCGTTCTAGGAAACTGGAGGATGCATTAATTAATGCAAAGAAACATTCTTCATATCGTCACGTGCAGTTGACCAAGCTGCACAAATGTTTTACGCAAGTGAAAGATTATACAGAGCGACTAAAAACCTGTGAAAAAGAACTTCAGACCCTGGTTGATACGGCAATGTTAGAGAGTGATGGTGATGACGATGCTGTTGGCTTCAAAGACGTACAATACATAAGTGGAACTGTATGA 1104 0.4239 MTIDDESSIYVGGLPYDATEDTIRSVFDLYGAILDVKIINDIRTRGKCYCFVTFTNPRSAVDAINDMNGRTIDGRVVKVNGVRTRGGRSNFGRELIHHNTDRNGDWDRGRDRDRDYNHDRDRHRDRNSGWSHERDRSRERDQSRDFEHEGDGRYDHTHYHDQEREPLHVKDRSQERHLADDEQEHSKVHGQATHRDYNLDFDTDRKMDRTYDPDRSFDGERNEHSRRNNGLNITKQPNMDFSSDSNGNRNDEIADQLERSTERLGQLKKEVSQLKEKLQEKRQLVPELQKRSRKLEDALINAKKHSSYRHVQLTKLHKCFTQVKDYTERLKTCEKELQTLVDTAMLESDGDDDAVGFKDVQYISGTV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1352 367 PANTHER GEO13361P1-RELATED 6 190 - -
Prci9g1352 367 CDD RRM_SF 9 80 - -
Prci9g1352 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Prci9g1352 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Prci9g1352 367 Coils Coil 323 343 - -
Prci9g1352 367 MobiDBLite consensus disorder prediction 229 250 - -
Prci9g1352 367 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Prci9g1352 367 MobiDBLite consensus disorder prediction 87 251 - -
Prci9g1352 367 Gene3D - 2 95 IPR012677 -
Prci9g1352 367 Coils Coil 367 367 - -
Prci9g1352 367 Gene3D - 245 351 - -
Prci9g1352 367 SMART rrm1_1 8 80 IPR000504 GO:0003723
Prci9g1352 367 MobiDBLite consensus disorder prediction 90 228 - -
Prci9g1352 367 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 99 - -
Prci9g1352 367 Coils Coil 250 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1352 Prci-Chr9 27034805 27038761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1352 3 79 Eukaryotic Initiation Factors Gene Family AT2G36660 31.169 1.24e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1352 - - vun:114179118 435.647