Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci9g1352 | ATGACGATTGACGACGAGAGCTCCATTTACGTTGGAGGTCTTCCCTACGATGCCACCGAAGATACCATCCGCTCCGTCTTTGATCTGTATGGCGCCATTCTTGATGTCAAGATTATTAATGATATCCGGACTAGGGGCAAGTGCTATTGTTTTGTAACTTTCACAAATCCTCGATCAGCGGTTGATGCAATCAATGACATGAATGGCAGGACCATTGATGGGCGTGTGGTTAAAGTAAATGGGGTGAGGACTCGAGGTGGAAGATCAAATTTTGGCAGAGAACTTATTCATCATAATACTGATAGGAATGGAGATTGGGATCGTGGTAGAGATCGAGACCGAGATTATAACCATGACAGGGACAGGCACAGGGATCGGAATAGTGGTTGGTCTCACGAGCGTGATAGGTCTCGAGAGCGTGACCAGTCTCGAGACTTTGAGCATGAAGGGGATGGAAGATATGACCACACACATTATCATGATCAAGAAAGAGAACCTTTGCATGTCAAAGATCGAAGTCAAGAGAGACATCTGGCAGATGATGAACAAGAACACAGCAAAGTACATGGTCAAGCTACACATAGAGACTATAACCTGGATTTTGATACGGACAGGAAGATGGACAGAACTTATGATCCTGACAGAAGTTTTGATGGGGAAAGAAATGAACACTCAAGGAGAAACAATGGATTGAATATTACAAAACAACCTAACATGGATTTTTCTTCAGACTCTAATGGTAACCGCAATGATGAGATTGCAGATCAATTAGAGAGGTCAACTGAAAGGCTTGGTCAACTGAAAAAAGAGGTCTCTCAGTTGAAAGAGAAGTTACAAGAGAAACGACAACTTGTACCGGAGTTACAAAAGCGTTCTAGGAAACTGGAGGATGCATTAATTAATGCAAAGAAACATTCTTCATATCGTCACGTGCAGTTGACCAAGCTGCACAAATGTTTTACGCAAGTGAAAGATTATACAGAGCGACTAAAAACCTGTGAAAAAGAACTTCAGACCCTGGTTGATACGGCAATGTTAGAGAGTGATGGTGATGACGATGCTGTTGGCTTCAAAGACGTACAATACATAAGTGGAACTGTATGA | 1104 | 0.4239 | MTIDDESSIYVGGLPYDATEDTIRSVFDLYGAILDVKIINDIRTRGKCYCFVTFTNPRSAVDAINDMNGRTIDGRVVKVNGVRTRGGRSNFGRELIHHNTDRNGDWDRGRDRDRDYNHDRDRHRDRNSGWSHERDRSRERDQSRDFEHEGDGRYDHTHYHDQEREPLHVKDRSQERHLADDEQEHSKVHGQATHRDYNLDFDTDRKMDRTYDPDRSFDGERNEHSRRNNGLNITKQPNMDFSSDSNGNRNDEIADQLERSTERLGQLKKEVSQLKEKLQEKRQLVPELQKRSRKLEDALINAKKHSSYRHVQLTKLHKCFTQVKDYTERLKTCEKELQTLVDTAMLESDGDDDAVGFKDVQYISGTV | 367 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci9g1352 | 367 | PANTHER | GEO13361P1-RELATED | 6 | 190 | - | - | |
Prci9g1352 | 367 | CDD | RRM_SF | 9 | 80 | - | - | |
Prci9g1352 | 367 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 84 | IPR000504 | GO:0003723 | |
Prci9g1352 | 367 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 78 | IPR000504 | GO:0003723 | |
Prci9g1352 | 367 | Coils | Coil | 323 | 343 | - | - | |
Prci9g1352 | 367 | MobiDBLite | consensus disorder prediction | 229 | 250 | - | - | |
Prci9g1352 | 367 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 112 | IPR035979 | GO:0003676 | |
Prci9g1352 | 367 | MobiDBLite | consensus disorder prediction | 87 | 251 | - | - | |
Prci9g1352 | 367 | Gene3D | - | 2 | 95 | IPR012677 | - | |
Prci9g1352 | 367 | Coils | Coil | 367 | 367 | - | - | |
Prci9g1352 | 367 | Gene3D | - | 245 | 351 | - | - | |
Prci9g1352 | 367 | SMART | rrm1_1 | 8 | 80 | IPR000504 | GO:0003723 | |
Prci9g1352 | 367 | MobiDBLite | consensus disorder prediction | 90 | 228 | - | - | |
Prci9g1352 | 367 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 2 | 99 | - | - | |
Prci9g1352 | 367 | Coils | Coil | 250 | 298 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci9g1352 | Prci-Chr9 | 27034805 | 27038761 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci9g1352 | 3 | 79 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 31.169 | 1.24e-06 | 48.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci9g1352 | - | - | vun:114179118 | 435.647 |