Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1351 ATGAAGGAGCCAGAAGAAGATCAAGTTAAATCCAGAAAACCTGTGCAGAAACACACGGATCGTAGAAGAAGAGGAAGGAGAAGAAGCCATTGCAAACCAGAGATATTAAAAGAAAAAGGGGTTGATTTAGAACTGAATCCTTCTTCTGCTTCTTGCAATAACCTTGAGTTCACCCATAGGCCTGGCTATGGCCAGCTGGGGACAAAGTGTGTGGTCAAAGCTAACCACTTTCTCGCAGATATATCAGCATCTGACTTGAGTCATTACAGTGTTAAGATAACACCTGAAGTTACTTCTCGTAAAATTAGCAAAGCTATCATTGCTGAGTTGGTGAGACTTCATAGAAATACAGACTTGGGTATGAGGCTTCCCGTTTATGATGGAGGAAGGAATCTTTACACTGCTGGTTTGCTTCCTTTTACACAAACAGAATTTACCATAACATTGACCGAAGAAGATGAGGGTACTGGCAATACCTGGGAAAAAGAGTTTAGAGTGAGAATCAAGTTCGCAACTCGTGTTAGCTTGCATCAGTTACGGGAGCTTCTAAATGGGAAACAAGTGAAAACCCCACAAGAAGCACTTAACATCATTGATATTGTATTAAGAGAGCTTGCGGCTCAAAGCTACGTACCGGTTGGAAGGTTTCTCTATTCTGCCGATATAAAAAAACCACAACAGCTAGGTGGTGGTTTGGAATCATGGCGCGGTTTCTATCAAAGTATAAGGCCTACTCAGATGGGATTGTCGCTTAACATTGACATGTCATCAATGGCGTTTATTGAACCACTCCCTGTCATTGATTTTGTTGCTCAAATTCTGGGTAAAGATGTGCATTCAAAACCATTGTCAGATGCAGATCGTGTCAAGATTAAAAAAGCCTTAAGAGGTGTGAAAGTTGAAGTTACTCACAGGGGAAATGTTCGAAGGAAGTACAGGATATCAGGACTCACGTCACAGCCTACCAGAGAGCTTATATTCCCTCTTGATGATCAAATGAACATGAAATCAGTAGTTGATTACTTCCGAGAGATGTACGGGTATACAATTAAGTATTCTCATCTACCATGCCTGCAAGTAGGGAACGAAAAGAAGGTCAATTATTTGCCAATGGAGGCAAGTCATGTGAGTCTTTGCCAGGCATGCAAGATTGTTGGGGGCCAGAGATATACAAAAGGGCTAAATGAGAAGCAAATAACTTCTCTGCTTAAAGTTTCATGTCAAAGACCCCGTGAACAAGAGCTAGACATTCTACAGACTGTTGAACAAAATGATTTTGAAAATAATCCCTACGCAAAGGAGTTTGGTATCAGCATAGACGACAAGCTTGCATCTGTTGAAGCTCGGGTTCTGCCTGCTCCATGGTTGAAATATCATGATACGGGAAGGGAGAGAGAGTACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGCATAGTGAGATATTGGGCATGTATCAATTTCTCACGTAGTGTTCAAGAAAGCACAGTTCGTGGTTTTTGCCAACAATTGGTTCAGATGTGCCAAATCTCAGGCATGGAATTCATTCAGGACCCAGTAATTCCAATATATGCAGCAAGACCAGATCAGGTCAAAAAGGCCTTGAAGTACGTACACTCTACTGCTTTGGACAAGCTTGTGGGAAAAGAGCTAGAGTTGCTTATTGCCATTCTTCCAGACAATAATGGCTCTCTTTACGGTGATCTCAAAAGAATTTGTGAAACAGATCTGGGGTTGATTTCTCAGTGCTGCCTCACAAAACACGTCTTCAAGATTAATAGACAGTACTTAGCAAATGTGGCACTTAAAATCAATGTTAAGATGGGAGGAAGAAACACAGTACTCTTGGATGCATTGAGTTGGAGGATTCCATTGGTTAGTGACATTCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAGGATTCTTCTCCATCCATTGCTGCTGTTGTAGCCTCACAGGACTGGCCTGAAGTAACAAAGTATGCAGGACTTGTGTGTGCTCAGCCTCATCGTGAAGAACTCATTCAAGACCTTTTCAAGTGTTGGAAAGATCCTGAGCACGGCATAGTTTATGGCGGCATGATCAGAGAGCTCTTACTCTCATTTAAGAAGGCAACTGGACAAAAACCATTGAGGATAATATTTTACAGGGACGGGGTAAGTGAAGGACAATTCTACCAGGTTTTGTTGTACGAGCTTGATGCGATACGCAAGGCTTGTGCATCACTGGAACCTAGTTACCAGCCTCCAGTAACATTCGTTGTGGTTCAAAAGCGGCATCACACTAGACTCTTCTCAAGCAATCATGATGACAGAAATAGCACTGACAGGAGCGGCAACATCTTACCAGGCACTGTGGTGGATTCTAAGATCTGTCATCCAACAGAATTTGATTTTTATTTATGCAGTCATGCAGGAATACAGGGCACAAGTAGACCAGCTCACTATCATGTCCTCTGGGACGAGAACAAATTCACTGCAGATGAGATTCAATCTTTAACCAACAACTTATGCTACACGTATGCAAGATGCACAAGATCTGTTTCAGTAGTGCCTCCAGCATACTATGCTCATCTGGCAGCTTACAGAGCTCGATTCTACATGGAACCTGATGTGCATGAGAATGCTAAAGCACGGAATGGAAGATCAAAGGACGGGTCGGTTCGGCCACTGCCAGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGA 2754 0.4223 MKEPEEDQVKSRKPVQKHTDRRRRGRRRSHCKPEILKEKGVDLELNPSSASCNNLEFTHRPGYGQLGTKCVVKANHFLADISASDLSHYSVKITPEVTSRKISKAIIAELVRLHRNTDLGMRLPVYDGGRNLYTAGLLPFTQTEFTITLTEEDEGTGNTWEKEFRVRIKFATRVSLHQLRELLNGKQVKTPQEALNIIDIVLRELAAQSYVPVGRFLYSADIKKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDDQMNMKSVVDYFREMYGYTIKYSHLPCLQVGNEKKVNYLPMEASHVSLCQACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQELDILQTVEQNDFENNPYAKEFGISIDDKLASVEARVLPAPWLKYHDTGREREYLPQVGQWNMMNKKVINGSIVRYWACINFSRSVQESTVRGFCQQLVQMCQISGMEFIQDPVIPIYAARPDQVKKALKYVHSTALDKLVGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPEHGIVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSSNHDDRNSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHENAKARNGRSKDGSVRPLPALKEKVKNVMFYC 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1351 917 SMART Piwi_a_2 560 881 IPR003165 GO:0003676
Prci9g1351 917 CDD Piwi_ago-like 430 880 IPR045246 -
Prci9g1351 917 SMART PAZ_2_a_3 268 396 IPR003100 GO:0005515
Prci9g1351 917 Gene3D paz domain 258 390 - -
Prci9g1351 917 ProSiteProfiles Piwi domain profile. 560 881 IPR003165 GO:0003676
Prci9g1351 917 FunFam Protein argonaute-2 257 391 - -
Prci9g1351 917 MobiDBLite consensus disorder prediction 1 32 - -
Prci9g1351 917 MobiDBLite consensus disorder prediction 15 30 - -
Prci9g1351 917 ProSiteProfiles PAZ domain profile. 264 378 IPR003100 GO:0005515
Prci9g1351 917 Pfam Argonaute linker 2 domain 416 458 IPR032472 -
Prci9g1351 917 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 56 882 - -
Prci9g1351 917 FunFam Argonaute 10 450 623 - -
Prci9g1351 917 SMART DUF1785_2 211 263 IPR014811 -
Prci9g1351 917 CDD PAZ_argonaute_like 263 372 - -
Prci9g1351 917 Gene3D - 450 623 - -
Prci9g1351 917 Pfam Argonaute linker 1 domain 212 261 IPR014811 -
Prci9g1351 917 FunFam protein argonaute 10-like 629 917 - -
Prci9g1351 917 Gene3D - 629 917 IPR036397 GO:0003676
Prci9g1351 917 SUPERFAMILY Ribonuclease H-like 549 882 IPR012337 -
Prci9g1351 917 SUPERFAMILY PAZ domain 259 426 IPR036085 GO:0005515
Prci9g1351 917 Pfam N-terminal domain of argonaute 68 202 IPR032474 -
Prci9g1351 917 Pfam Piwi domain 561 880 IPR003165 GO:0003676
Prci9g1351 917 Pfam PAZ domain 268 402 IPR003100 GO:0005515
Prci9g1351 917 Pfam Mid domain of argonaute 469 546 IPR032473 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1351 Prci-Chr9 27013350 27025649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1351 54 917 Eukaryotic Initiation Factors Gene Family AT5G43810 73.968 0.0 1381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1351 K11593 - gmx:100813485 1608.58