Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1342 ATGGATAAGAAAAAGGTGGCGGTTCCGCTTGTTTGCCACGGCCATTCCCGTCCTGTAGTGGATCTCTTTTACAGTCCTGTTACGCCCGATGGATTCTTCCTCATCAGTGCAAGCAAGGATTCTAGTCCTATGCTTAGAAATGGTGAGACTGGAGACTGGATTGGAACATTTGAAGGGCACAAAGGTGCGGTATGGAGTTGCTGCTTGGATACAAATGCTTTACGTGCTGCAACTGCCTCTGCTGACTTTTCATCGAAAGTTTGGGATGCATTAACAGGAGATGAATTACACTCGTTTGAACACAAGCACATTGTTCGTGCATGTGCTTTTTCTGAGGATACACATCTTTTACTCACTGGGGGAGTAGAGAAAATTCTCCGAATCTATGACTTGAATCGTCCTGATGCATCACCGAGAGAAGTTGATAAGTCCCCTGGTTCGATCAGAACTGTTACATGGCTTCATAGTGACCAGACAATATTAAGTTCTTGTACTGATATGGGAGGTGTCAGGTTATGGGATATAAGAAGTGGCCAAATAGTCCAGACACTTGAGACCAAGTCATCTGTGACCAGTGCTGAAGTGAGTCAGGATGGGCGCTACATCGTAACTGCAGATGGTTCTACTGTTAAATTTTGGGACGCGAATTACTATGGCTTGGTTAAGAGTTATGATATGCCTTGCACCATTGAATCAGCTTCTTTGGAACCTAAGTATGGTAATAAATTTGTTGCTGGGGGAGAAGACATGTGGGTTCGTGTTTTTGATTTCCATACTGGCCATGAGATTGCATGCAACAAGGGCCACCATGGTCCTGTTCACTGCCTCCGTTTCTCTCCTGGGGGAGAATCATATGCCTCAGGATCTGAGGATGGAACCATCAGAATATGGCAAACTGGGCCTTTGACCTTTGATGGGTCGGACTCTATATCAGCAAATGGATCAGTTGCGAAGGTGAAGGTTAATGCAGACGAGGTTTCACGCAAGATTGAGGGTTTTCATATTGCAGATGAGGAGAAATCCAAAGAAAAGGAACAGGCGGTGGAGGAATAG 1053 0.452 MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSSKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDLNRPDASPREVDKSPGSIRTVTWLHSDQTILSSCTDMGGVRLWDIRSGQIVQTLETKSSVTSAEVSQDGRYIVTADGSTVKFWDANYYGLVKSYDMPCTIESASLEPKYGNKFVAGGEDMWVRVFDFHTGHEIACNKGHHGPVHCLRFSPGGESYASGSEDGTIRIWQTGPLTFDGSDSISANGSVAKVKVNADEVSRKIEGFHIADEEKSKEKEQAVEE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1342 350 FunFam Serine-threonine kinase receptor-associated protein 8 321 - -
Prci9g1342 350 SMART WD40_4 92 130 IPR001680 GO:0005515
Prci9g1342 350 SMART WD40_4 50 89 IPR001680 GO:0005515
Prci9g1342 350 SMART WD40_4 177 214 IPR001680 GO:0005515
Prci9g1342 350 SMART WD40_4 134 174 IPR001680 GO:0005515
Prci9g1342 350 SMART WD40_4 217 256 IPR001680 GO:0005515
Prci9g1342 350 SMART WD40_4 259 298 IPR001680 GO:0005515
Prci9g1342 350 SMART WD40_4 5 47 IPR001680 GO:0005515
Prci9g1342 350 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 341 - -
Prci9g1342 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Prci9g1342 350 CDD WD40 14 298 - -
Prci9g1342 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Prci9g1342 350 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Prci9g1342 350 Pfam WD domain, G-beta repeat 266 297 IPR001680 GO:0005515
Prci9g1342 350 Pfam WD domain, G-beta repeat 178 214 IPR001680 GO:0005515
Prci9g1342 350 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Prci9g1342 350 SUPERFAMILY WD40 repeat-like 5 298 IPR036322 GO:0005515
Prci9g1342 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 139 IPR001680 GO:0005515
Prci9g1342 350 Gene3D - 9 323 IPR015943 GO:0005515
Prci9g1342 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1342 Prci-Chr9 26994288 26997866 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1342 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 28.221 2.84e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1342 K13137 - gmx:100782712 681.789