Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1340 ATGCTCAGAAATGGAGAGACTGGAGATTGGATTGGAACATTTGAAGGGCACAAAGGTGCCGTATGGAGTTGCTGCTTGGATACAAATGCTTTACGTGCTGCAACTGCCTCTGCTGATTTCTCATCGAAAGTTTGGGATGCATTAACAGGAGATGAATTACACTCGTTTGAGCATAAGCACATTGTTCGTGCATGTGCTTTTTCTGAGGATACACACCTTTTACTCACTGGAGGATTAGAGAAAATTCTCCGCATCTATGACTTGAATCGTCCCGATGCACCACCCAGAGAAGTTGAGAAGTCCTCTGGTTCTATCAGAACAGTTACATGGCTCCATAGTGACCAGACAATATTAAGTTCTTGTACCGATATGGGAGGTGTCAGGTTATGGGATATAAGAAGTGGTCAAATAGTCCAGACACTTGAGACCAAATCATCTGTGACTAGTACTGAAGTGAGCCGGGATGGTCGTTACATCATAACTGCAGATGGTTCTACTGTTAAATTTTGGGATGCAAATTACTACGAGTTGGTGAAGAGTTATGATATGCCTTGCACTGTTGAATCAGCCTCATTGGAACCTAAACATGGGAATAAATTCGTTGCTGGGGGAGAAGACATGTGGGTTCGTGTTTTTGACTTCCATACTGGCAATGACATTGCATGCAACAAAGGCCACCATGGTCCTGTGCACTGTGTGCGTTTCTCTCCTGGGGGTGAATCATATGCCTCAGGATCTGAGGACGGAACCATTAGAATATGGCAAACTGGCCCTTTGACCTATGATGAGTCAGAGTCTATGTCTGCAAATGGATCACTTGCAAAGGTGAAGGTTGACGCAGACGAGGTTTCTTGCAAGATTGAGGGCTTGCATATTGCAGAGGAGGGGAAATCCGAGGAAAAGATAGAGGCGGGGGACGAATAA 924 0.4491 MLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSSKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGLEKILRIYDLNRPDAPPREVEKSSGSIRTVTWLHSDQTILSSCTDMGGVRLWDIRSGQIVQTLETKSSVTSTEVSRDGRYIITADGSTVKFWDANYYELVKSYDMPCTVESASLEPKHGNKFVAGGEDMWVRVFDFHTGNDIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTYDESESMSANGSLAKVKVDADEVSCKIEGLHIAEEGKSEEKIEAGDE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1340 307 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 298 - -
Prci9g1340 307 Gene3D - 1 279 IPR015943 GO:0005515
Prci9g1340 307 Pfam WD domain, G-beta repeat 224 254 IPR001680 GO:0005515
Prci9g1340 307 Pfam WD domain, G-beta repeat 51 87 IPR001680 GO:0005515
Prci9g1340 307 Pfam WD domain, G-beta repeat 11 46 IPR001680 GO:0005515
Prci9g1340 307 Pfam WD domain, G-beta repeat 135 171 IPR001680 GO:0005515
Prci9g1340 307 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 255 - -
Prci9g1340 307 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 55 IPR001680 GO:0005515
Prci9g1340 307 CDD WD40 11 256 - -
Prci9g1340 307 SUPERFAMILY WD40 repeat-like 3 255 IPR036322 GO:0005515
Prci9g1340 307 ProSiteProfiles Trp-Asp (WD) repeats profile. 55 89 IPR001680 GO:0005515
Prci9g1340 307 SMART WD40_4 91 131 IPR001680 GO:0005515
Prci9g1340 307 SMART WD40_4 7 46 IPR001680 GO:0005515
Prci9g1340 307 SMART WD40_4 216 255 IPR001680 GO:0005515
Prci9g1340 307 SMART WD40_4 174 213 IPR001680 GO:0005515
Prci9g1340 307 SMART WD40_4 134 171 IPR001680 GO:0005515
Prci9g1340 307 SMART WD40_4 49 87 IPR001680 GO:0005515
Prci9g1340 307 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 255 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1340 Prci-Chr9 26983734 26987490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1340 6 253 Eukaryotic Initiation Factors Gene Family AT2G46290 27.273 2.57e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1340 K13137 - gmx:100818422 568.155