Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1316 ATGAGTTTTCCTGATCATCACTCTGGCTTCATGCTATCGCCGCTACCATTTGCGGCGGACGAAGATTCCAATGGAAGGTGGCCGCAATTCCCAATCAACAACGAACTATTCGATTCACGTTCAACATTTGATCATCTTCCTCCGTTCAAGCGGCCCAGAACATCCGAAAGCAGTCACTTCGATCACTCGCCATTCCCGCCGCCCAGGATGCACCACCTTCAAAATCCTCCGACAAACAGAGGAGGAACGAGCCACATTTTTTACAAGACTCGCCCTTGTGCTAAATTCAAAATGGGCACCTGTAGGAACGGCGAGAATTGCAATTTTGCTCATGGCGAAGAGGACATGAGGCAGCCACCACCAAATTGGCAGGCACTTGTTGGTTTGCGCGATGAAGAACGGCCGTCTGGAAACTGGGACGATGACCAGAAAATCATACATAAGATGAAGCTGTGCAAGAAGTATTACAATGGTGAGGAATGTCCTTATGGTGAAAGGTGCAATTTTCTTCATGAAGACCCGTCCAAGTTCAGGGATGATGCAGGGAGGAGCAGGGAGAGCTCAGCTATAAGCCTTGTGGCTAATGGATCTCCAAAGTCGCACTTGAATGGCCCTAATAATTCAGACAATAATAAGACTGTCAACTCTGGTTGTGATGGTTTTAGAACAAATGGGAAGGCTCCTTTCTGGAAGACCAAGTTATGTAGCAAGTGGGAGACAACAGGACAGTGCCCTTTCGGCGATAAATGTCATTTTGCTCATGGACAAGCAGAGTTACAAGCGCCTTGTGGACGCGGTGAAGCAGAAGCTATAGGAGCACAATCAATTCCAATAAATGATATAACTCCTATAAACACTGCAAGTATACTTGATTCAAAAGAAGAGGAGCAGAACAAGAAGAATTTGCTGAAGTGGAAAATAAATAAGAAGGTCAATCGAATTTATGGTGATTGGCTCGATGATTTTCCATTTCCAAGGTAG 981 0.4557 MSFPDHHSGFMLSPLPFAADEDSNGRWPQFPINNELFDSRSTFDHLPPFKRPRTSESSHFDHSPFPPPRMHHLQNPPTNRGGTSHIFYKTRPCAKFKMGTCRNGENCNFAHGEEDMRQPPPNWQALVGLRDEERPSGNWDDDQKIIHKMKLCKKYYNGEECPYGERCNFLHEDPSKFRDDAGRSRESSAISLVANGSPKSHLNGPNNSDNNKTVNSGCDGFRTNGKAPFWKTKLCSKWETTGQCPFGDKCHFAHGQAELQAPCGRGEAEAIGAQSIPINDITPINTASILDSKEEEQNKKNLLKWKINKKVNRIYGDWLDDFPFPR 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1316 326 Gene3D - 143 175 - -
Prci9g1316 326 Gene3D - 223 261 - -
Prci9g1316 326 Gene3D - 82 118 - -
Prci9g1316 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 148 171 IPR000571 GO:0046872
Prci9g1316 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 256 IPR000571 GO:0046872
Prci9g1316 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 113 IPR000571 GO:0046872
Prci9g1316 326 PANTHER CCCH ZINC FINGER/TIS11-RELATED 53 180 IPR045877 GO:0003729
Prci9g1316 326 MobiDBLite consensus disorder prediction 194 215 - -
Prci9g1316 326 ProSiteProfiles Zinc finger C3H1-type profile. 146 174 IPR000571 GO:0046872
Prci9g1316 326 SUPERFAMILY CCCH zinc finger 146 173 IPR036855 GO:0046872
Prci9g1316 326 FunFam Zinc finger CCCH domain-containing protein 82 118 - -
Prci9g1316 326 SUPERFAMILY CCCH zinc finger 228 260 IPR036855 GO:0046872
Prci9g1316 326 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Prci9g1316 326 MobiDBLite consensus disorder prediction 48 82 - -
Prci9g1316 326 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Prci9g1316 326 SMART c3hfinal6 146 173 IPR000571 GO:0046872
Prci9g1316 326 SMART c3hfinal6 229 256 IPR000571 GO:0046872
Prci9g1316 326 SUPERFAMILY CCCH zinc finger 85 118 IPR036855 GO:0046872
Prci9g1316 326 FunFam Zinc finger CCCH domain-containing protein 39 143 175 - -
Prci9g1316 326 FunFam Zinc finger CCCH domain-containing protein 224 261 - -
Prci9g1316 326 ProSiteProfiles Zinc finger C3H1-type profile. 229 257 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1316 Prci-Chr9 26823808 26826465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1316 229 260 C3H Transcription Factor Family AT1G68200 59.375 8.34e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci9g1316 zf-CCCH 2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1316 - - pcin:129320676 693.73