LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci9g1181	ATGGCAAGTAACGGTGCCGAAAAGATCCCTATCAATAATGATACTGAAGGTTCAGAAGCCACCATTGAGATAAAGATTAAAACATTGGACTCACAGATTTATACTCTCAAAGTGGATAAACAGATGCCTGTTCCTGCTTTGAAGGAACAGATTGCTTCTGTAACTGGAGTGTTGTCAGAGCGGCAGCGCTTAATTTGCCGAGGAAAAGTTCTAAAGGATGATCAACTCCTTTCTGCCTACCATGTTGAAGATGGTCATACCTTGCATCTGGTTGTGAGGCAACCTGATCTAACTGGAAGTTTGCACAATCAATCAGCATCTGATCCACTTTCAAGCACAAACAATGGTCACAGTAATCAAATAGCTCCTGGCGTTTTTATTGAAACTTTTAATGTGCCTGTTCAGGGAGATGGAGTTCCTCCAGAAGTTAATAGGATCATTTCTGCTATTCTAGGATCTATTGGAATTTCAAATTTTCCAAGTGGCAGTGAAGGGATTGATGTCAGGGGACATGATTCCCGAGGGCTTGGGAGAACATCAGGTTCAAGTGGCATATCAGATTCATTTCAGCCTCAAACTGAACAAGCTGGTTTGCGGAATTCCTCTGATAGATCACGCAATGCATTTGGACTTCCAGCAGCAGCTTCTTCTTTGGGATCATTATATCCTCCTGTCATTCCTGATTCTTTGACAACCTTGTCTCATTACGTGAGTCATCTAAGGCATGAGTTTGAAGCCATTGTGAGAGAAGGGGGAAGTAGTATCCAAGCAGCTGAGGCTCATAGGAATGAAGCATCGATTTCTTCTTCACCTTCAGGTTCTACATCAGAAGGGCTTTTGTCACCTGCGTACTTGGCAGAAGTCTTGCATTCTACCAGACGGATGTTCACTGAACAGGCTGGCGAGTGCTTATTTCAACTTTCAACACAACTCGAGAATCAAGCTAATGTAACTGATCCCTTATTGCGGTCAAACACTCAGTCTATGGCTTGGAGGACTGGAGTTCTGTTTTATAATCTTGGCGCATTTTTACTCGAGCTTGGTCGTACAACCATGGCTTTACGTTTGGGTCAAACACCGTCTGAAGCTGTCGCTAATGGTGGACCAGCAGTTTTTATATCCTCATCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCAGCCTTTGGTTCTGCCCCTGTTGGAGCTGTGCAGCCCCCCTCTGGTTTAGGTAGCGGGCTTGGTTCAAGTTTTTACCCAAGGCGTATAGATATTCAAATACGGCGAGGTACATCAACATCCTCAGCTAATGTCAACCGAGAGGAACATGGGGATGCACAATCTGCCTCAGTACAAAGAAATCCTGTTGAAGTTTCTGTTAATCAAACAAGCTCAAGATTTCCAGAGGATTTATCTGTTGGTGGGGAGTCAGGAGTACGGATAGTGCCAATAAGAACCATGGTTGCAGCAGTACCTAGCCACTTAGGTCGCAACCCTTCGGAATCTTCTGCTAATTCTATAGGGTTTTACTATCCTGTTATTGGGAGATTTCAGCACGTACCTTCTGGAAATGGGAATAGTGAATCAGGATCTCAACCTGCCAGTCAGCATCAAGCTTCTAGTTTTCATGCTGCTCAACAGTCAACACCTGAATCCACTGGGCAAAGGCAAAGTATGGATGATCCTGCAAGAAATGGATCTTCATTGACTTCTAGCTTAAGACAAGAGCCATCTAATACCCGCAGGGTGAACATTAATATTCTGACGGCTGGTGGACTTCAGAACAACCAAGAATCTGAGAGACAGATACCCAATAATGTACTTCAGTTTATAAGAGCACTCTTTCCTGGTGGTGAAATTCATGTTGAAGATTCTAGTTCACCAGGAACAGCAGCTGATCCTACCTCAGATCATGCTGGAACATCAACAGGTGCTGCTCGTGCTCCTGATTCGGAGCCCAGTGCTAGTGAGGAAGGAATATTTTTGTCTAACTTACTCCGCGAGGTCATGCCCCTCATATCACAAGCAGGGTCTGGGACACATGTAACCCCTCAAGGTGAAAACGCTTCAGACAACCAAACAACTTCTGATTCTTCCACCCAGGGGGGGACATCACGCAGACGAAGTGATTCTGAGCCAAGCCCTCCGAATCCTAAACGCCAAAAGATGGAGTGA	2169	0.4486	MASNGAEKIPINNDTEGSEATIEIKIKTLDSQIYTLKVDKQMPVPALKEQIASVTGVLSERQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLTGSLHNQSASDPLSSTNNGHSNQIAPGVFIETFNVPVQGDGVPPEVNRIISAILGSIGISNFPSGSEGIDVRGHDSRGLGRTSGSSGISDSFQPQTEQAGLRNSSDRSRNAFGLPAAASSLGSLYPPVIPDSLTTLSHYVSHLRHEFEAIVREGGSSIQAAEAHRNEASISSSPSGSTSEGLLSPAYLAEVLHSTRRMFTEQAGECLFQLSTQLENQANVTDPLLRSNTQSMAWRTGVLFYNLGAFLLELGRTTMALRLGQTPSEAVANGGPAVFISSSGPNHIMVQPLPFQPGAAFGSAPVGAVQPPSGLGSGLGSSFYPRRIDIQIRRGTSTSSANVNREEHGDAQSASVQRNPVEVSVNQTSSRFPEDLSVGGESGVRIVPIRTMVAAVPSHLGRNPSESSANSIGFYYPVIGRFQHVPSGNGNSESGSQPASQHQASSFHAAQQSTPESTGQRQSMDDPARNGSSLTSSLRQEPSNTRRVNINILTAGGLQNNQESERQIPNNVLQFIRALFPGGEIHVEDSSSPGTAADPTSDHAGTSTGAARAPDSEPSASEEGIFLSNLLREVMPLISQAGSGTHVTPQGENASDNQTTSDSSTQGGTSRRRSDSEPSPPNPKRQKME	722

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci9g1181	722	SUPERFAMILY	Ubiquitin-like	17	97	IPR029071	-
	Prci9g1181	722	CDD	Ubl_ubiquitin_like	24	91	-	-
	Prci9g1181	722	ProSiteProfiles	Ubiquitin domain profile.	22	97	IPR000626	GO:0005515
	Prci9g1181	722	MobiDBLite	consensus disorder prediction	165	205	-	-
	Prci9g1181	722	PANTHER	LARGE PROLINE-RICH PROTEIN BAG6	11	717	-	-
	Prci9g1181	722	MobiDBLite	consensus disorder prediction	429	468	-	-
	Prci9g1181	722	Pfam	Ubiquitin family	24	94	IPR000626	GO:0005515
	Prci9g1181	722	MobiDBLite	consensus disorder prediction	617	654	-	-
	Prci9g1181	722	Gene3D	-	15	117	-	-
	Prci9g1181	722	MobiDBLite	consensus disorder prediction	258	278	-	-
	Prci9g1181	722	SMART	ubq_7	22	93	IPR000626	GO:0005515
	Prci9g1181	722	MobiDBLite	consensus disorder prediction	626	640	-	-
	Prci9g1181	722	MobiDBLite	consensus disorder prediction	674	709	-	-
	Prci9g1181	722	MobiDBLite	consensus disorder prediction	673	722	-	-
	Prci9g1181	722	MobiDBLite	consensus disorder prediction	176	205	-	-
	Prci9g1181	722	MobiDBLite	consensus disorder prediction	429	472	-	-
	Prci9g1181	722	MobiDBLite	consensus disorder prediction	259	278	-	-
	Prci9g1181	722	MobiDBLite	consensus disorder prediction	518	579	-	-
	Prci9g1181	722	FunFam	Large proline-rich protein BAG6	14	107	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci9g1181	Prci-Chr9	25777587	25791768	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci9g1181	22	93	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	36.111	2.53e-08	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci9g1181	K23390		-	gmx:100783070	912.524