Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1173 ATGGGGTCGACCAATAGTAGACCTCGGTCTGGCCCTTTCACCCCCCGAGTCAATGGCACTAACCGCTTCAGATTCTCCTCCCTCCTCTGCGGTGGCTCCGCCTCCCGTTCCACTTACGAGGTGGAAGGTCAACCAAATGAACTGCAGAGAGATTCTGCAACAGAATTTAGCGATGAAAATCAGAAAGTTGTTGAGGATTCATCTATATCATGTACAGAAGCTAGAATTGGTTGCAGCTCCCATGCTGAAACCGCAAGCTCATCTGATGTCAGAACTGAGTTGATTGAGATTGCAAATGTTGAAGGTTCCTCCAGAAGTGCTTCAACTAGTTTTCAGACAAAGTGCTTGTCTGAAAGTAAGGAGCTAGTTCCTCCTCATCAGGTAAGTGCTGATCATAGTCATGATGAATCTTATAGGGATATTAGCAACACAGCTAGTACATTTGTAGAACAGCACTCTTCAGATCCAGGCTCTGTAAATGTTTCTGCTAACAAAGATGCAGTCGATAATATTGATGGTTCAGTGGCTAGTGGTGTTTCTCAAATATCTCGTGAGACAATGTATCCAAGGAGCTCAACCTCTCAAGAGCAAGGAGATTCCAGTGCTGATAATATTTCTATTGAGAATCACCCTCGTTCAGTTGCACCTATCCGCAGTCCTGAATTGGATCATCTTGCTCAAGTTTCCAATTTACCTGTGACTTCTGAGTTGCCTCAAAATGAAACCCATCAGGAGACAATACCTTCAGGTTTGGGTTTTCTTGTTTCCAATAGGGAAAGAGGACAGGGAAATGACAGTATGTTTCATGTTGATGTTGTCGCAATATCTTCCAACATTTTATCTGGTGGCAATGCTGATGTTAGTGATCATGATGCCAGAAGGGATAGTAGAAGACTATTTTGGGATGCTTTTTCAAGACGTAGTTCCAGAAGATTTGGTGATTCTCGAACCATTGTCTTCTCAGCTGGTGATGTTGATGATCCAAGTTCTCAAGATCAATGGCTTCTTGATTTGAGTAATAATTCCTCAGGTGATAGGGTTGCGGATGATTCTGGATATTTGGGCAGTAGAATTCACAGGTTGAACGAACGAATGCGGCACTCAAGATCTGTGATCTGGGAAAGACTTCATGGTGGCCTTGATGAGATTGGCCGGTTGAATCCTTCTTGTCCGATAGGACTCCACCCTGATGGCATGTGCTCATGTGAGTCTCTACAGATGGCTGAGGAATCCAGCACTCGTGCAAGTATATCTAGAATAGCCATGCTTGCTGAAGCTCTATTTGAGGTTTTGGATGAAATTCATCGCCAACCTGTATCACTTGCCCTCTCCATGGTCTCTCTCCCAGCACCTGAATCAATCGTAGAATCTTTCCCTCTTAAGTGTCACAAAAAGATTGACACAGCTGATAATGGCAATGATGTTGAACAATGTTACATATGCTTGGCTGAGTATGAGGAAGGAGACAAAATTCGTGTTCTTCCATGCAATCATGAGTACCACATGTCATGTGTTGACAAGTGGCTTAAAGAAATACATGGTGTATGCCCTCTTTGTCGTGGAAATGTTTGTGGAGGGTCCAACGAGTCTTCTGCCTCTGACGCAGAAGTACCATCTCAATGA 1623 0.4381 MGSTNSRPRSGPFTPRVNGTNRFRFSSLLCGGSASRSTYEVEGQPNELQRDSATEFSDENQKVVEDSSISCTEARIGCSSHAETASSSDVRTELIEIANVEGSSRSASTSFQTKCLSESKELVPPHQVSADHSHDESYRDISNTASTFVEQHSSDPGSVNVSANKDAVDNIDGSVASGVSQISRETMYPRSSTSQEQGDSSADNISIENHPRSVAPIRSPELDHLAQVSNLPVTSELPQNETHQETIPSGLGFLVSNRERGQGNDSMFHVDVVAISSNILSGGNADVSDHDARRDSRRLFWDAFSRRSSRRFGDSRTIVFSAGDVDDPSSQDQWLLDLSNNSSGDRVADDSGYLGSRIHRLNERMRHSRSVIWERLHGGLDEIGRLNPSCPIGLHPDGMCSCESLQMAEESSTRASISRIAMLAEALFEVLDEIHRQPVSLALSMVSLPAPESIVESFPLKCHKKIDTADNGNDVEQCYICLAEYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGSNESSASDAEVPSQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1173 540 MobiDBLite consensus disorder prediction 36 65 - -
Prci9g1173 540 Pfam Ring finger domain 477 520 IPR001841 -
Prci9g1173 540 FunFam Putative RING zinc finger domain superfamily protein 445 525 - -
Prci9g1173 540 MobiDBLite consensus disorder prediction 36 51 - -
Prci9g1173 540 MobiDBLite consensus disorder prediction 174 207 - -
Prci9g1173 540 MobiDBLite consensus disorder prediction 116 138 - -
Prci9g1173 540 SUPERFAMILY RING/U-box 463 523 - -
Prci9g1173 540 ProSiteProfiles Zinc finger RING-type profile. 478 520 IPR001841 -
Prci9g1173 540 SMART ring_2 478 519 IPR001841 -
Prci9g1173 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 539 - -
Prci9g1173 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 526 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1173 Prci-Chr9 25740608 25745661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1173 354 524 C3H Transcription Factor Family AT5G45290 45.946 1.84e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1173 - - pcin:129320229 1011.13