Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1172 ATGGGGTCGACCAATAGTAGACCTCGGTCTGGCCCTTTCACCCCCCGAGTCAATGGCACTAACCGCTTCAGATTCTCCTCCCTCCTCTGCGGTGGCTCCGCCTCCCGTTCCACTTACGAGGTGGAAGGTCAACCAAATGAACTGCAGAGAGATTCTGCAACAGAATTTAGCGATGAAAATCAGAAAGTTGTTGAGGATTCATCTATATCATGTACAGAAGCTAGAATTGGTTGCAGCTCCCATGCTGAAACCGCAAGCTCATCTGATGTCAGAACTGAGTTGATTGAGATTGCAAATGTTGAAGGTTCCTCCAGAAGTGCTTCAACTAGTTTTCAGACAAAGTGCTTGTCTGAAAGTAAGGAGCTAGTTCCTCCTCATCAGGTAAGTGCTGATCATAGTCATGATGAATCTTATAGGGATATTAGCAACACAGCTAGTACATTTGTAGAACAGCACTCTTCAGATCCAGGCTCTGTAAATGTTTCTGCTAACAAAGATGCAGTCGATAATATTGATGGTTCAGTGGCTAGTGGTGTTTCTCAAATATCTCGTGAGACAATGTATCCAAGGAGCTCAACCTCTCAAGAGCAAGGAGATTCCAGTGCTGATAATATTTCTATTGAGAATCACCCTCGTTCAGTTGCACCTATCCGCAGTCCTGAATTGGATCATCTTGCTCAAGTTTCCAATTTACCTGTGACTTCTGAGTTGCCTCAAAATGAAACCCATCAGGAGACAATACCTTCAGGTTTGGGTTTTCTTGTTTCCAATAGGGAAAGAGGACAGGGAAATGACAGTATGTTTCATGTTGATGTTGTCGCAATATCTTCCAACATTTTATCTGGTGGCAATGCTGATGTTAGTGATCATGATGCCAGAAGGGATAGTAGAAGACTATTTTGGGATGCTTTTTCAAGACGTAGTTCCAGAAGATTTGGTGATTCTCGAACCATTGTCTTCTCAGCTGGTGATGTTGATGATCCAAGTTCTCAAGATCAATGGCTTCTTGATTTGAGTAATAATTCCTCAGGTGATAGGGTTGCGGATGATTCTGGATATTTGGGCAGTAGAATTCACAGGTTGAACGAACGAATGCGGCACTCAAGATCTGTGATCTGGGAAAGACTTCATGGTGGCCTTGATGAGATTGGCCGGTTGAATCCTTCTTGTCCGATAGGACTCCACCCTGATGGCATGTGCTCATGTGAGTCTCTACAGATGGCTGAGGAATCCAGCACTCGTGCAAGTATATCTAGAATAGCCATGCTTGCTGAAGCTCTATTTGAGGTTTTGGATGAAATTCATCGCCAACCTGTATCACTTGCCCTCTCCATGGTCTCTCTCCCAGCACCTGAATCAATCGTAGAATCTTTCCCTCTTAAGTGTCACAAAAAGATTGACACAGCTGATAATGGCAATGATGTTGAACAATGTTACATATGCTTGGCTGAGTATGAGGAAGGAGACAAAATTCGTGTTCTTCCATGCAATCATGAGTACCACATGTCATGTGTTGACAAGTGGCTTAAAGAAATACATGGGTCCATCAAATGTATTGTTGTAAGCAAATCCCACCTTTTTAAGGTGTATGCCCTCTTTGTCGTGGAAATGTTTGTGGAGGGTCCAACGAGTCTTCTGCCTCTGACGCAGAAGTACCATCTCAATGAGTACATACGTCAATGTAAATATAAACATCATTTAGCTCACGTCAATGGCATGTATTAA 1725 0.4319 MGSTNSRPRSGPFTPRVNGTNRFRFSSLLCGGSASRSTYEVEGQPNELQRDSATEFSDENQKVVEDSSISCTEARIGCSSHAETASSSDVRTELIEIANVEGSSRSASTSFQTKCLSESKELVPPHQVSADHSHDESYRDISNTASTFVEQHSSDPGSVNVSANKDAVDNIDGSVASGVSQISRETMYPRSSTSQEQGDSSADNISIENHPRSVAPIRSPELDHLAQVSNLPVTSELPQNETHQETIPSGLGFLVSNRERGQGNDSMFHVDVVAISSNILSGGNADVSDHDARRDSRRLFWDAFSRRSSRRFGDSRTIVFSAGDVDDPSSQDQWLLDLSNNSSGDRVADDSGYLGSRIHRLNERMRHSRSVIWERLHGGLDEIGRLNPSCPIGLHPDGMCSCESLQMAEESSTRASISRIAMLAEALFEVLDEIHRQPVSLALSMVSLPAPESIVESFPLKCHKKIDTADNGNDVEQCYICLAEYEEGDKIRVLPCNHEYHMSCVDKWLKEIHGSIKCIVVSKSHLFKVYALFVVEMFVEGPTSLLPLTQKYHLNEYIRQCKYKHHLAHVNGMY 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1172 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 524 IPR013083 -
Prci9g1172 574 MobiDBLite consensus disorder prediction 36 65 - -
Prci9g1172 574 FunFam Putative RING zinc finger domain superfamily protein 445 523 - -
Prci9g1172 574 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 514 - -
Prci9g1172 574 MobiDBLite consensus disorder prediction 174 207 - -
Prci9g1172 574 MobiDBLite consensus disorder prediction 36 51 - -
Prci9g1172 574 SMART ring_2 478 521 IPR001841 -
Prci9g1172 574 MobiDBLite consensus disorder prediction 116 138 - -
Prci9g1172 574 ProSiteProfiles Zinc finger RING-type profile. 478 518 IPR001841 -
Prci9g1172 574 SUPERFAMILY RING/U-box 463 511 - -
Prci9g1172 574 Pfam RING-like zinc finger 477 505 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1172 Prci-Chr9 25740608 25745662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1172 354 516 C3H Transcription Factor Family AT5G45290 43.750 4.99e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1172 - - pcin:129320229 1134.78