Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1163 ATGGCTTTTCACGACCATCTACCTCAAGAACTGGCTTTTCAGCCTTTCACGGACGAGCAACAGTTAAGTCAAAACAGGGACATGCAGAGGATGATGCCGTTCTCAGCCGCCGCTGCAGGGGGAGGACCGGCCCCGACATGGCTGGTGAATAGCGCTGGATCTCTCCGGCAGCAGAATTTCCTCCACTTGCAGCCCGACTCGGCCGATGATGTTCGGGGGAGTATGATGACGTCGGACAGGAGCAACGATCGCGAGGGCGGCGATCGGAGCCGGGCCGACGGCAATTGTGAATCTGAGGATTTGGCAGAATACAAAGCTGACATTTTGGGACATCCCCTTTACGACCAGCTCTTGTCGGCTCATGTGTCGTGTTTAAGGATTGCCACTCCGGTGGACCAGCTTCCTAGGATCGACGCTCAGCTTCAACAGTCACAGCGCGTGCTTGAAAAATACTCTGGTCTCGGAAATGGGGTCGTCGACGAGAAGGAGCTTGACCAGTTCATGACGCATTATGTTCTATTGCTCTGTGCTTTCAAAGAACAACTGCAACAACATGTCCGAGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGAGCTTGAGCAGTCTCTTCAGAGCTTGACTGGTGTGTCTCCGGGAGAAGGGACAGGAGCAACAATGTCGGACGATGAAGATGAGCAGGTTGAGAGTAATGCTAACCTTTACGAAGGTGGTCTTGATGGAGCTGACAGCCTCGGATTTGGTCCTCTTGTTCCCACTGAAACTGAAAGATCTTTGATGGAGCGTGTGAGACTGGAGTTGAAGCATGAATTAAAGCAGGGTTACAAGGAGAAGATTGTGGACATACGTGAGGAGATTCTGAGAAAGAGGCGTGCCGGGAAGCTGCCCGGGGACACAACCTCGCTTTTGAAAGCTTGGTGGCAATCACATTCCAAATGGCCTTATCCTACTGAGGAAGACAAAGCAAGGTTGGTTCAAGAAACAGGCTTGCAATTAAAGCAAATAAATAACTGGTTTATTAATCAAAGGAAAAGGAACTGGCACACTAATCCCTCATCATCTAGCTCCTCTAAAAGCAAGCGCAAGAGTAATGCAGGAGAAACCAGTAACCAGAGCTTCATGTGA 1125 0.504 MAFHDHLPQELAFQPFTDEQQLSQNRDMQRMMPFSAAAAGGGPAPTWLVNSAGSLRQQNFLHLQPDSADDVRGSMMTSDRSNDREGGDRSRADGNCESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLEKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDEQVESNANLYEGGLDGADSLGFGPLVPTETERSLMERVRLELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSSSKSKRKSNAGETSNQSFM 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1163 374 SMART KNOX2_2 153 209 IPR005541 GO:0003677|GO:0005634
Prci9g1163 374 ProSiteProfiles 'Homeobox' domain profile. 286 349 IPR001356 GO:0003677
Prci9g1163 374 SMART HOX_1 288 353 IPR001356 GO:0003677
Prci9g1163 374 Pfam ELK domain 266 287 IPR005539 GO:0003677
Prci9g1163 374 SMART KNOX1_2 102 146 IPR005540 GO:0003677|GO:0005634
Prci9g1163 374 FunFam homeobox protein knotted-1-like 3 isoform X1 287 348 - -
Prci9g1163 374 MobiDBLite consensus disorder prediction 343 374 - -
Prci9g1163 374 Pfam Homeobox KN domain 306 345 IPR008422 GO:0003677|GO:0006355
Prci9g1163 374 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 107 360 - -
Prci9g1163 374 SUPERFAMILY Homeodomain-like 288 353 IPR009057 -
Prci9g1163 374 Gene3D - 292 370 - -
Prci9g1163 374 ProSiteProfiles ELK domain profile. 266 286 IPR005539 GO:0003677
Prci9g1163 374 Pfam KNOX1 domain 104 145 IPR005540 GO:0003677|GO:0005634
Prci9g1163 374 SMART ELK_2 266 287 IPR005539 GO:0003677
Prci9g1163 374 MobiDBLite consensus disorder prediction 64 95 - -
Prci9g1163 374 CDD homeodomain 289 350 IPR001356 GO:0003677
Prci9g1163 374 Pfam KNOX2 domain 159 208 IPR005541 GO:0003677|GO:0005634
Prci9g1163 374 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1163 Prci-Chr9 25720469 25724607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1163 47 362 Homeobox Transcription Factor Family AT5G25220 74.242 3.09e-171 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci9g1163 KNOX2 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1163 - - pcin:129320455 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci9g1163 9 25720469 25724607 Prci9g1163 9 25720469 25724607 ECH