Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1125 ATGGATAATGTGAGCCCAGAAGGTTTAGATTCAAATGGCGATTGTTATCCCACCTATCCAAACAAACATTTAGGACATGGCAGCAAAGAATCCATTAATAAATTAAAGGGCATTGTGCCACGGCAGAATGGGAGTTGGGGTTCTAAGATGTATGTTAATAGTCATCAGATTTGGCTTGGGACTGTCAAGTCCAAAAAGGAACCCGAGATGGCTCATGAAAGTGTGACTATTCAGCTTCGCTGCGCTGGTTCTCACCAGAATTTTCCTTGGACTGATTTTACTGTTGAGGAGCCAAGCTTCATGAGTCAATATAGCCAAGAAGCTGTACTTGAGATGATAAGGGGTGGTTCATGCCAACCAATATTCCAAGGACATCATAGGGATAATTATGGAAAGGCTGAATTAGGTATTTGTGGCCCCAACCTTTCTGCAATGCAGAGGAGAGGTGGCTTCTCATGTAAACTACTTTTCCGAAAGATGCTGACACCGAGCGATGTGGGTAGGCTGAACAGAATTGTCATACCCAAGAAAAATGCCACCACGTGCTTTTCTGAGATCTCTGGAAGAATGGAAGAAGATGCAAAAGTTGGAGTGGTCACTGATGTGCAGGTAGATTTCTTTGACAGAATGATGAGGTGCTGGAAGTTCCGGTACTGCTTTTGGAAGAGCAGCCAGAGTTATGTGTTCACGAGGGGTTGGAGCAGGTTTGTGAAAGATAACCAGTTGAAGGTTAATGATGTTGTTGCCTTTTACTTGTGTGAAGTCCAAAGGGAAGGAAAAATAGTGGACAAGTTCTTCATGATTGACCCTGTGAGAGGTGAAGAATCTGTTGGTAATGGCAGCAGCAGCTCAGTGATTGAAGTTTCTGATCACAATGCTGGGTTGAAACCTGAAATGTTAACCTCGGTATTTGAAGGCACTTATCACAACAATGTTGGGTTGAGACCTAAAATTAGTAGTTCATCAGTATTTGAAGGAGCTTCTTGTCACCACCATAATGTTGAGAAGAAGCTCGGAGAGGAAGTGACGGAAGTTGACCCACCAAGCAATGTTGAGAGGAAAGGATTTAGACTCTTTGGGGTTAAAATCAATTGA 1095 0.4301 MDNVSPEGLDSNGDCYPTYPNKHLGHGSKESINKLKGIVPRQNGSWGSKMYVNSHQIWLGTVKSKKEPEMAHESVTIQLRCAGSHQNFPWTDFTVEEPSFMSQYSQEAVLEMIRGGSCQPIFQGHHRDNYGKAELGICGPNLSAMQRRGGFSCKLLFRKMLTPSDVGRLNRIVIPKKNATTCFSEISGRMEEDAKVGVVTDVQVDFFDRMMRCWKFRYCFWKSSQSYVFTRGWSRFVKDNQLKVNDVVAFYLCEVQREGKIVDKFFMIDPVRGEESVGNGSSSSVIEVSDHNAGLKPEMLTSVFEGTYHNNVGLRPKISSSSVFEGASCHHHNVEKKLGEEVTEVDPPSNVERKGFRLFGVKIN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1125 364 Pfam B3 DNA binding domain 157 260 IPR003340 GO:0003677
Prci9g1125 364 ProSiteProfiles AP2/ERF domain profile. 34 89 IPR001471 GO:0003700|GO:0006355
Prci9g1125 364 SUPERFAMILY DNA-binding pseudobarrel domain 155 254 IPR015300 -
Prci9g1125 364 SMART B3_2 157 261 IPR003340 GO:0003677
Prci9g1125 364 ProSiteProfiles B3 DNA-binding domain profile. 157 269 IPR003340 GO:0003677
Prci9g1125 364 CDD B3_DNA 156 252 IPR003340 GO:0003677
Prci9g1125 364 Gene3D - 148 267 IPR015300 -
Prci9g1125 364 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 33 363 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1125 Prci-Chr9 25440248 25448837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1125 34 269 RAV Transcription Factor Family AT1G50680 49.213 4.87e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci9g1125 B3 8.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1125 K09287 - qsu:112008228 280.411