Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1100 ATGGGTTGGGGGATATTTGGTTCAATCGTAGTTCTGACGTTTTTCTTTGAGCATTTGGCTTGCCAGCGACCAAATACTGATGATTTCTTTGTGTCTGAGTTCTTGAAGAACATGAGTGTATCATCATCTTCTTCCCAAGCCTTCAACTTCTCTGCTTCTGTTTGTTCATGGCCTGGGATTTCCTGTGATGCAAATAAAGAACATGTGGTTGAGTTGAAAGCTTCTTGTATGGGACTTTCTGGGCCTATTCCTGATAACACCATTGGCAAGCTCAGCAAGCTTCAGACTTTGGATCTTAGTAACAACAAAATCACTGCCTTGCCTTCTGATTTCTGGAGCTTAGGCTCTCTCAAGATTCTCAACCTCTCGTTCAATGAGATATCAGGTTCACTTGCGAGCAACTTTGGCAACTTCGGTCTCCTCGAAACCTTTGACTTGTCCAGCAACAATTTTTCTGGGGAAATTCCTGAAGCTATTAGCTCCCTTGTGAGTTTAAGGATCCTCAAACTTGATAAAAACAAGTTTGAGCAGAACATACCTTTTGAGATTCTACAAATTCAATCTCTAGTTTCTATTGATCTTTCACAAAATCAGCTCAATGGCACTCTTCCTGAAGGTTTTGGAGCTGCTTTTCCTAAACTTGAAAGCTTAAACCTTGCAGGGAATAATCTTCATGGTCATGATTCAGATTTTTCAGGATTGAAATCCATTACTAGTATCAACATATCTGAAAATTCCTTTCACGGTTCTGTTCTGGGTATGTTTCAGGAACAGTTGGGTGTCATTGACCTTAGCAGGAACCAGTTTGAGGGTCAGATTTCTCAGGTAAAGTTCAAGTACAATTGGTCTCATTTGGTTTATCTGGATTTGTCTGAGAATAGGCTTGGTGGGGAAATTTTCCAGTATCTGAATGAAGCCCAAAATCTTAAACACCTTAATCTAGCACACAATAGATTTGCAAGTCAGAAATTTCCACAGCTTGAAAACCTCTCGAGATTGGAATATCTGAACTTGTCCAAAGCTAATCTGCATGGCTACATTCCTGCTGAAATATCACAGCTGAGCAATCTGAATTCACTTGACATTTCTTTGAATCATCTTATAGGGGGAATTCCGTTTCTGAGAAGTGAAAACCTCCAAATTCTTGACCTTTCATACAACAATTTGAGTGGAGAAATCCCTCAACCTTTGTTGCAGAAACTCCCATCAATGGAGAAATATAACTTCTCTTATAATAACTTAACCTTCTGCTTTTTGGGAATCAACCCCAATATCCTGCGAACAGCATTCTATGGATCATCAGACAATTGCCCTCTTGCTGCAAATCCTAATCTTTTCAAAAGAACAAATGAGCGCAAGGGGATGAAGCTAGCTGTGGCATTGACCCTCTCAATGATCTGCTTACTTTCTGGCCTTTTATTTCTAGCATTTGGTTGCAGAAGGAAAACAAAGTCATGGGCAATTAAGAAAACTTCCTACAAAGAAGAGCAGAACATTTCGGGCCCCTTCTCGTTCCAGACTGATTCAACTACCTGGGTAGCTGATGTCAAGCAAGCAAACTCAGTCCCAGTTGTAATCTTTGAGAAGCCTTTACTGAACATTACATTTGCAGATCTCCTGTACTCAACTTCAAATTTTGATCGCGGTACCCTTTTGGCTGAAGGGAAGTTTGGACCTGTTTACCGAGGCTTTCTGCCCAGTGGCATTCAAGTGGCAGTTAAAGTATTGGTTGTTGGGTCCACATTGACAGATCAAGAAGCTGCAAAAGAGCTCGAGTATCTTGGTCGAATCAAGCATCCCAATCTTGTTCCCCTAACTGGATATTGCTTTGCTGGGGATCAAAGGATTGCCATATATGATCACATGGAGAATGGGAACTTGCAAAACTTTCTTCATGACTTGCCACTTGGGGCACAGAGGACAGATGATTGGAGCACAGACACACTGGAAGGAGATGACACAAATGTAATTCACAATGCTAGCTCTGAGGGATTATCACTCTCATCTTGGCAATTTCGACACAAAATTGCCCTTGGCACTGCTCGAGCATTGGCATTTCTTCACCATGGCTGCTCACCTCCAATCATTCACAGAGATGTTAAGGCTAGCAGTGTCTACTTGGACTACAACTTGGAGCCAAGGTTGTCTGATTTTGGGCTGGCCAAGACTTTTGGAAGCAGCTTGGATGAGGAGATTGATCGAAGCTCTCCTGGCTACGTTCCACCCGAGTTTTCTCAACCTGAATATGGCCTCCCAACACCAAAATCTGACGTTTACTGTTTTGGGGTCGTTCTCTTTGAGTTAATTACTGGGAAAAAACCAGTTGGGGATGATTATCCTGAAGAGAAAGAAGGGACTTTGGTAAGTTGGGTAAGAGCATTGGTAAGAAAGAACCTAGCTGCAAGAGCTATTGATCCCAAAATTAGTGATAGAGGAATTGATGATCAAATTGAAGAAGCCCTCAAGATTGGTTATCTCTGCACTGCTGATTTTCCCTCCAAGCGACCTAGCATGCAGCAGATACTGGGACTTCTGAAAGATATTGAACCTACTGCTTAG 2559 0.4189 MGWGIFGSIVVLTFFFEHLACQRPNTDDFFVSEFLKNMSVSSSSSQAFNFSASVCSWPGISCDANKEHVVELKASCMGLSGPIPDNTIGKLSKLQTLDLSNNKITALPSDFWSLGSLKILNLSFNEISGSLASNFGNFGLLETFDLSSNNFSGEIPEAISSLVSLRILKLDKNKFEQNIPFEILQIQSLVSIDLSQNQLNGTLPEGFGAAFPKLESLNLAGNNLHGHDSDFSGLKSITSINISENSFHGSVLGMFQEQLGVIDLSRNQFEGQISQVKFKYNWSHLVYLDLSENRLGGEIFQYLNEAQNLKHLNLAHNRFASQKFPQLENLSRLEYLNLSKANLHGYIPAEISQLSNLNSLDISLNHLIGGIPFLRSENLQILDLSYNNLSGEIPQPLLQKLPSMEKYNFSYNNLTFCFLGINPNILRTAFYGSSDNCPLAANPNLFKRTNERKGMKLAVALTLSMICLLSGLLFLAFGCRRKTKSWAIKKTSYKEEQNISGPFSFQTDSTTWVADVKQANSVPVVIFEKPLLNITFADLLYSTSNFDRGTLLAEGKFGPVYRGFLPSGIQVAVKVLVVGSTLTDQEAAKELEYLGRIKHPNLVPLTGYCFAGDQRIAIYDHMENGNLQNFLHDLPLGAQRTDDWSTDTLEGDDTNVIHNASSEGLSLSSWQFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKTFGSSLDEEIDRSSPGYVPPEFSQPEYGLPTPKSDVYCFGVVLFELITGKKPVGDDYPEEKEGTLVSWVRALVRKNLAARAIDPKISDRGIDDQIEEALKIGYLCTADFPSKRPSMQQILGLLKDIEPTA 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1100 852 Pfam Leucine rich repeat 188 246 IPR001611 GO:0005515
Prci9g1100 852 Pfam Leucine rich repeat 83 127 IPR001611 GO:0005515
Prci9g1100 852 Gene3D Ribonuclease Inhibitor 376 445 IPR032675 -
Prci9g1100 852 Pfam Leucine Rich repeat 283 298 IPR001611 GO:0005515
Prci9g1100 852 Pfam Leucine Rich repeat 377 392 IPR001611 GO:0005515
Prci9g1100 852 Pfam Protein tyrosine and serine/threonine kinase 550 842 IPR001245 GO:0004672|GO:0006468
Prci9g1100 852 Gene3D Phosphorylase Kinase; domain 1 506 621 - -
Prci9g1100 852 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Prci9g1100 852 Gene3D Transferase(Phosphotransferase) domain 1 622 852 - -
Prci9g1100 852 Gene3D Ribonuclease Inhibitor 30 180 IPR032675 -
Prci9g1100 852 FunFam Calmodulin-binding receptor kinase CaMRLK 257 373 - -
Prci9g1100 852 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 282 416 - -
Prci9g1100 852 ProSiteProfiles Protein kinase domain profile. 546 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci9g1100 852 SMART serkin_6 546 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci9g1100 852 FunFam Putative LRR receptor-like serine/threonine-protein kinase 507 621 - -
Prci9g1100 852 CDD STKc_IRAK 552 848 - -
Prci9g1100 852 Gene3D Ribonuclease Inhibitor 181 279 IPR032675 -
Prci9g1100 852 Gene3D Ribonuclease Inhibitor 280 375 IPR032675 -
Prci9g1100 852 PRINTS Leucine-rich repeat signature 94 107 - -
Prci9g1100 852 PRINTS Leucine-rich repeat signature 354 367 - -
Prci9g1100 852 SUPERFAMILY Protein kinase-like (PK-like) 522 845 IPR011009 -
Prci9g1100 852 SUPERFAMILY L domain-like 48 424 - -
Prci9g1100 852 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 132 228 - -
Prci9g1100 852 SMART LRR_typ_2 138 162 IPR003591 -
Prci9g1100 852 SMART LRR_typ_2 91 113 IPR003591 -
Prci9g1100 852 SMART LRR_typ_2 186 210 IPR003591 -
Prci9g1100 852 SMART LRR_typ_2 211 233 IPR003591 -
Prci9g1100 852 SMART LRR_typ_2 330 354 IPR003591 -
Prci9g1100 852 SMART LRR_typ_2 114 137 IPR003591 -
Prci9g1100 852 ProSiteProfiles Leucine-rich repeat profile. 93 114 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1100 Prci-Chr9 25377627 25381167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1100 68 848 Receptor kinase-like Gene Family AT5G07280 31.931 3.06e-109 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Prci9g1100 PK_Tyr_Ser-Thr 8.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1100 - - gmx:100797738 1290.4