Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1084 ATGTGCTTGCCGATAGCAGTTCAGTTCGTGCAGGCATCGCTGTTTCCGCAGTTCACTAAAACTGACAGTTTCTTAGCTCTCCCTCCCTCTCTCTCTCTCTCTCGCTCTCAGAAGGATGATGTGAGCCTTCCGGAGATTCCGCTCGGCGATCTTTCTGGTTCTCTCCTTCTCTTGCTATGCGATTCTACCGCACCTATTGAAAGATCGTGCAATTGTTTTCAAGGTTTTATATATTGGGTATATGTGATCAACTTTTCAAAGATGTTTGACTGTGGTTACAAGGCTCATTACATGGATGGTCAGCGGGAAAAATTTTTGAGGTTGGATGACTTGGACTCTAGACCATCTCCATCTTCTGATGCTGGGCTTGATGAATGTGGATTTAGTATGGTTAAATTAAGCCGTGGTGGTTATACAAGAATTGGAACCACTGGATCTTTTAAAAGAGGAATGAGAATGGGATCTGAAGGACTAAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCTAGGGCAGTCTTCCCAGAAGACCTTAAAGTATCAGAGAAGAAGATATTTGATCCTCAAGACAAATTTTTACTCTTATGGAATAAGCTTTTTGTAATCTCATGCATTTTGGCTGTCTCTATTGATCCATTGTTTTTTTATCTCCCTGTGATCAATGATTCAGTTAACTGTCTTGGTATAGACCGAAAGTTGGCGATCATAGTTAGCACTATAAGAACAATCATTGATGCTTTCTATCTTATACGCATGGCTCTCCAATTTCGCACTGCTTATATAGCTCCATCGTCTCGTGTCTTTGGACGGGGTGAACTTGTTATAGATCCATCACAAATAGCCAAGCGATACATGCAGCGATATTTCATTATTGATTTCCTTTCAGTGCTGCCCTTGCCACAGATTGTAGTTTGGAGGTTTCTTCAGAGGTCAAATGGTTCGGATGTACTGTCAACAAAAGAGGCATTGCTGTTCATTATCTTGCTTCAGTATGTCCCTAGATTTCTCCGAATGGTACCATTGACTTCAGAGCTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGAGCTGCGTATTATTTGCTATTATACATGCTAGCCAGTCATATAGTTGGGGCTTTTTGGTACTTGTTAGCTGTTGAACGCAATGATTCATGCTGGCAGAAGGCTTGTAGTGAAAATGGGTGTAATAACAATTTCTTGTACTGTGGCAACCAACTCATGGAAGGGTATAGTGCCTGGCAAAATAGGAGCAAAGATATTCTCCATTCACAGTGCTCTGTAGATCCTGAAAACCCACCTTTTGATTATGGAATTTTTACCCAAGCATTTTCATCTGGCATTGTTTCATCTAAGGTATTTATCTCTAAATATTGCTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAAGGACTTCAAACCAGCACCTATGTTGGGGAGGTTGTATTTTCAATAGCGCTAGCCATTTTTGGGCTTATCCTCTTTGCACTCCTGATTGGTAACATGCAGACGTACCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTCAAAAGACGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCCCATGAGCTTAGAGAGCGTGTTAGACGCTATGATCAATATAAATGGTTGGCAACACGTGGTGTAGATGAAGAAAATTTGGTGCAGAATCTACCAAAGGATCTTAGAAGAGATATTAAGCGTCATCTTTGTCTAGCTTTAGTTAGAAGGGTTCCAATATTCGAGAGTATGGATGAGAGCTTACTTGATGCAATTTGTGAGAGACTGAAACCATGCTTGTTTACGGAGAATGCTTTCATTGTCCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATCCGTGGTCGCCTCGAGAGTGTTACGACAGATGGTGGGAGAAGTGGATTTTTCAACCGCACTTTCCTTAAAGAGACAGACTTCTGTGGCGAGGAGCTTTTAACTTGGGCCTTGGATCCCAAATCTGGTTCCAACCTTCCATCTTCTACCAGAACAGTTAAGACACTTGCAGAGGTGGAGGCTTTTGCATTGATTTCTGAAGATTTAAAGTTTGTTGCAAGTCAATTTAGGCGCCTCCATAGCAGGCAGGTTCAACACACCTTCCGCTTTTACTCACAACAATGGAGAACTTGGGCTGCTTGCTTTATTCAAGCAGCCTGGCGTCGTTATTGCAAGCGGAAGATTATGGAGCTTCGTCGAAAAGAAGAATGCGAGGAATCAGGAGGAGTTCGCAACAATGCCGGTGGTGGTTCATACAGTATTCGTGCCACCTTCTTAGCCTCAAGATTTGCAGCCAATGCTCTTCGCGGGGTTCATCGCAGCAGGAATGCCAAGACTTCCAGAGAATTGGTGACCCTACGAAAACCACCAGAGCCTGACTTTACTGCAGATGAATGA 2454 0.4307 MCLPIAVQFVQASLFPQFTKTDSFLALPPSLSLSRSQKDDVSLPEIPLGDLSGSLLLLLCDSTAPIERSCNCFQGFIYWVYVINFSKMFDCGYKAHYMDGQREKFLRLDDLDSRPSPSSDAGLDECGFSMVKLSRGGYTRIGTTGSFKRGMRMGSEGLKSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSIDPLFFYLPVINDSVNCLGIDRKLAIIVSTIRTIIDAFYLIRMALQFRTAYIAPSSRVFGRGELVIDPSQIAKRYMQRYFIIDFLSVLPLPQIVVWRFLQRSNGSDVLSTKEALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAVERNDSCWQKACSENGCNNNFLYCGNQLMEGYSAWQNRSKDILHSQCSVDPENPPFDYGIFTQAFSSGIVSSKVFISKYCYCLWWGLQNLSTLGQGLQTSTYVGEVVFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPHELRERVRRYDQYKWLATRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPIFESMDESLLDAICERLKPCLFTENAFIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKETDFCGEELLTWALDPKSGSNLPSSTRTVKTLAEVEAFALISEDLKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKRKIMELRRKEECEESGGVRNNAGGGSYSIRATFLASRFAANALRGVHRSRNAKTSRELVTLRKPPEPDFTADE 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1084 817 Pfam Ion transport protein 195 518 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Prci9g1084 817 Gene3D Jelly Rolls 590 710 IPR014710 -
Prci9g1084 817 FunFam Cyclic nucleotide-gated ion channel 1 519 583 - -
Prci9g1084 817 SMART cnmp_10 592 723 IPR000595 -
Prci9g1084 817 SUPERFAMILY cAMP-binding domain-like 521 711 IPR018490 -
Prci9g1084 817 FunFam Cyclic nucleotide-gated ion channel 1 590 708 - -
Prci9g1084 817 Gene3D Helix hairpin bin 520 583 - -
Prci9g1084 817 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 177 813 - -
Prci9g1084 817 SUPERFAMILY Voltage-gated potassium channels 187 514 - -
Prci9g1084 817 CDD CAP_ED 592 723 IPR000595 -
Prci9g1084 817 ProSiteProfiles cAMP/cGMP binding motif profile. 592 676 IPR000595 -
Prci9g1084 817 Gene3D - 198 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1084 Prci-Chr9 25297403 25310955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1084 88 817 Ion Channels AT2G23980 74.933 0.0 1142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1084 K05391 - gmx:100820202 1229.54