Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g1000 ATGTGGTTGATACTAACATTTATATTAATGCAAAGTTACACAGCATGCTTGTCATCAATCATGGTAGTACATCAATTGCAACCTAGTTACCCAAATCGCTTGAAGTACGATAGGTTGAGAGTGAAGAACTACCCTGACATGGAAGAATATAAGGAGGCTCTAGACAAAGGAAGCAATAAAGGTGGTGTTGATGCTATTTTTGATCATGTTTCCCACATCAAGATCTTCCTCAATCAATATGGATCCAAGTATGTCATGGTTGAAACTGGACTTCGCACAGATGGATTTGCTTTTGCATTCCCCAAAGGTTCCAATTTGACATCGTACTTTTCTAGAGCCATATTAAATGTGAGAGAGAGTGAAGAAATGGACAAGATTGAGGAGAAATATTTTGGAAGTAGCGATGACAATGAAGACCAAGGCCTATCTAATTCATCGTCAAACGAAGTGAGTTCCAGCCTCACCACTTATAGTTTTGCAGGTTTGTTCATTGTAATTGTAATTCTTTCGCTGTTAGCTTTGCTAGTCTCTGAAAGTCACCTTTGGCAAAAACCTGTTATGCTTGCAAAAACGTATAGTCGACAATTTTTGTGTAGAAGTTTTTCAAGAACGAGTCTAGTAGAAGGTTCAACAACAAAAGAAAATGTTGATGAAAAAGGTTTTACAACCAGCTGA 675 0.3763 MWLILTFILMQSYTACLSSIMVVHQLQPSYPNRLKYDRLRVKNYPDMEEYKEALDKGSNKGGVDAIFDHVSHIKIFLNQYGSKYVMVETGLRTDGFAFAFPKGSNLTSYFSRAILNVRESEEMDKIEEKYFGSSDDNEDQGLSNSSSNEVSSSLTTYSFAGLFIVIVILSLLALLVSESHLWQKPVMLAKTYSRQFLCRSFSRTSLVEGSTTKENVDEKGFTTS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g1000 224 MobiDBLite consensus disorder prediction 136 150 - -
Prci9g1000 224 Pfam Ligand-gated ion channel 1 168 IPR001320 GO:0015276|GO:0016020
Prci9g1000 224 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 184 IPR015683 -
Prci9g1000 224 Pfam Bacterial extracellular solute-binding proteins, family 3 38 132 IPR001638 -
Prci9g1000 224 SUPERFAMILY Periplasmic binding protein-like II 34 133 - -
Prci9g1000 224 Gene3D - 22 137 - -
Prci9g1000 224 MobiDBLite consensus disorder prediction 131 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g1000 Prci-Chr9 24712755 24716580 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g1000 1 176 Ion Channels AT5G11210 33.000 1.94e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g1000 K05387 - pcin:129319408 409.453