Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0990 ATGGCCAACCCAAATTACTATTACCATGGTTATCTTGTAATGTTTTCTTGTGCTGTGTTGTTAACAGCTCAGATTGGAGCAAGTGATGGTGCAGGGTCACTCCTGGGAGGGAAGAAGTTGATAGTTGGTGTTCCTAAGAAAGTGAGCTTCATCCAGTTTGTGGATGTACAACTGAATCCCTTGAACAAGAGTCAGCTCGTGAATGTTACAGGCTATTCTATTGACATTTTCTTGGCTGCAGTAGCTTATCTTCAGCGTTCAAACTACAATATTTCTTTCGAGTTTAGTGCTTTTGTAGACAAAAATGGAAACACTATTGGGGGTTACGACGCACTCATCCGCCAGGTTAACGAAGGAAAGACCAAGCCAGCTGACTGTATAACGAGGTTGGTCAGGCCTGGAATTTCCACGTTTTTCACTATTTTTTGCAGCAAGTATGATGCTGCTGTGGCAGATTTGACAATAGTGGCAAATAGGTCAAACTATGTAGATTTTACATTACCATATGCACAGTCTGATGTGAGGATGCTTGTGAAACTCCGAAATGATCCACGCTTGAATATGTGGACTTTTGTACAACCATTTAGCTGGGACATGTGGCTATGCATTGTCGTGGTCTCTGTTTTTACTGGAGGTATTATATTATTCATGGAACACAATGTCCAAGAAGATTCAATGCTTAAAAATTCTCCCATTAGAAAACAACTTAGTGGGGTTTCAATCTTGTGGCTCCCTGTAGTGCAAGCAGTTTTTCCTGAAAGAGGATCATTGGCAAAGAATTGCTCAAAGTTTGTGTTGGTGATGTGGTTGATTCTAGTATTTATACTGATGCAAAGTTACACTGCTTGCTTATCATCAATCTTGACAGTACATCAGCTTCAATCTCATTACCCTAGTGAGGATGACATTATAACAGACCCTAGCATTTTTGTTGGATGCCACTATGGCTCATTCATAAATGGCTTATTAGTTGATAGCTTGAGTATTGATAGTTCAAGAGTGAAGGAATACTCGAGCATTAAGCAATATAAGGAGGCTTTAGAAAAGGGAAGCCGAAGAGGTGGTGTTGATGCCATTTTTGACGAGGTTCCCTACATTAAAGTCTTTCTAGCCAAATATGGTTCAAATTATGCCATGGTGGGGCCTAGGCATCGCAATGCTGGATTTGGCTTTGCATTTTGTAAGAATTCGACCTTAACCTCGTACTTTTCTCAAGCCATATTAAATGTAAGTGAGAGTAAAGAAATGGACTGCATTGAGGATAGATATTTTAACACCTGTGAAGATGATGGCATATCTTCTTCATCGTCAGATGTTGATAGTCCCAGCCTCACCGCATATAGCTTTGCAGGTTTGTTTGTAGTATTTGGAATTCTCTCACTCTTAGCTTTGTTAATCTCTGAACATCATTTTTGGAGAAGACATGTCATGCTTATGAAAATGCATAGCCAAAAATTCTTGAGCTGGAGTTCCACAAGAACCAACACGTCAGAGGAAGGTTCTAGAACGAGAATAAATGTTGATGATGATGGAGAAGGTTCTGTGAACAGAGAAAATATTAGATTATCAGGAGATGGAGAATATAACTACGTAAAGATATTGGTGGCATCTCTTCCCTAA 1620 0.3969 MANPNYYYHGYLVMFSCAVLLTAQIGASDGAGSLLGGKKLIVGVPKKVSFIQFVDVQLNPLNKSQLVNVTGYSIDIFLAAVAYLQRSNYNISFEFSAFVDKNGNTIGGYDALIRQVNEGKTKPADCITRLVRPGISTFFTIFCSKYDAAVADLTIVANRSNYVDFTLPYAQSDVRMLVKLRNDPRLNMWTFVQPFSWDMWLCIVVVSVFTGGIILFMEHNVQEDSMLKNSPIRKQLSGVSILWLPVVQAVFPERGSLAKNCSKFVLVMWLILVFILMQSYTACLSSILTVHQLQSHYPSEDDIITDPSIFVGCHYGSFINGLLVDSLSIDSSRVKEYSSIKQYKEALEKGSRRGGVDAIFDEVPYIKVFLAKYGSNYAMVGPRHRNAGFGFAFCKNSTLTSYFSQAILNVSESKEMDCIEDRYFNTCEDDGISSSSSDVDSPSLTAYSFAGLFVVFGILSLLALLISEHHFWRRHVMLMKMHSQKFLSWSSTRTNTSEEGSRTRINVDDDGEGSVNRENIRLSGDGEYNYVKILVASLP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0990 539 Pfam Bacterial extracellular solute-binding proteins, family 3 144 425 IPR001638 -
Prci9g0990 539 SUPERFAMILY Periplasmic binding protein-like II 12 425 - -
Prci9g0990 539 Gene3D - 189 316 - -
Prci9g0990 539 Gene3D - 320 428 - -
Prci9g0990 539 Pfam Ligand-gated ion channel 426 458 IPR001320 GO:0015276|GO:0016020
Prci9g0990 539 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 488 IPR015683 -
Prci9g0990 539 Gene3D - 33 188 - -
Prci9g0990 539 SMART GluR_14 39 426 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0990 Prci-Chr9 24545359 24548881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0990 37 475 Ion Channels AT2G29120 37.104 5.02e-69 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0990 K05387 - pcin:129319224 1063.14