Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0988 ATGGGAATCGAAAGAGGAAACCTCAAGGGCTTTCGGAGCGGCAGCTGGACTGTGCCGCCAAAGCCGTGTGACTCGTGCAAATCGGCGACAGCGGCTGTTTTCTGCCGAGCCGACTCGGCTTTCCTCTGCATGCTCTGTGACAACGAGATTCATTCCGCCAATAAGCTGGCTTTGCGCCACGAGCGTGTGTGGATGTGCGAGGTGTGCGAGCAGGCTCCCGCCTCCGTCACCTGCAAGGCCGACGCCGCCGCGCTCTGCGTCACTTGCGATTCGGATATCCATTCCGCCAATCCGCTCGCCCGCCGTCACGAGCGTGTCCCCGTGGAGCCCTTCTTTGATTCCGCCGACTCTGTAGCGAAATCCTCTGCTGCTGCCTTTAACTTGCTGGTTCCAACTGATAACGGAATTGGATCCGATGGATTCCTCCAGGAAGAATCCGAATCAGCATCGTGGCTAATTTCAAATCCCAGTTTCAACCCAAAGATCATGGATGTTCCGGATATCAAATCGGGCGATATGTTTTTCCCGGAAATGGAGTATCCTTTGCTGGATTTCGATTACTCAAACTCCTTCGATCAGAATGACACTAACAGAGGGGGTAACAACGATGGTGTAGTCCCAGTCCAAGCTCGGGTTATGAACCATATGGAGAGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTCTCCTCAATTAACTATCCAACGCAGTCGTTTACCCGTCAAAGCGTATCGTCTTCTTCCGTTGATGTTGGAGTAGTGCCAGACGGAGGAAACACGGTGTCGGAAATCTCGTTCCCGATCGGCCAGAACATAAGTAACAGTTCGGAATCGAGCGGAATCATATCGGCCGGTAATTCTACAACGCAATTGGGAAGTTCGGCGAGTGGCATGAACCGAGAAGCTAGGGTTTTGAGATACAGGGAGAAGAGGAAGAACCGGAAGTTCGAGAAAACCATACGGTACGCGTCGCGGAAGGCTTACGCAGAGACTCGGCCGAGGATCAAAGGGCGGTTCGCTAAACGGACCGAGATGGAGTCGGATTTTGACCGGCTGTTCAACGCGGTTGAACCCACAACAGATCTGTTGCTGGATACTCAGTACGGCGTTGTGCCCTCTTTTTAA 1125 0.528 MGIERGNLKGFRSGSWTVPPKPCDSCKSATAAVFCRADSAFLCMLCDNEIHSANKLALRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSADSVAKSSAAAFNLLVPTDNGIGSDGFLQEESESASWLISNPSFNPKIMDVPDIKSGDMFFPEMEYPLLDFDYSNSFDQNDTNRGGNNDGVVPVQARVMNHMESCFDIDFCRSKLSSINYPTQSFTRQSVSSSSVDVGVVPDGGNTVSEISFPIGQNISNSSESSGIISAGNSTTQLGSSASGMNREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEMESDFDRLFNAVEPTTDLLLDTQYGVVPSF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0988 374 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Prci9g0988 374 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Prci9g0988 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 354 IPR045281 GO:0009909
Prci9g0988 374 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Prci9g0988 374 Pfam B-box zinc finger 20 62 IPR000315 GO:0008270
Prci9g0988 374 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Prci9g0988 374 CDD Bbox1_BBX-like 66 108 - -
Prci9g0988 374 CDD Bbox1_BBX-like 22 65 - -
Prci9g0988 374 SMART bboxneu5 66 108 IPR000315 GO:0008270
Prci9g0988 374 SMART bboxneu5 18 65 IPR000315 GO:0008270
Prci9g0988 374 Pfam CCT motif 300 342 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0988 Prci-Chr9 24499044 24500618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0988 1 374 C2C2-CO-like Transcription Factor Family AT5G57660 53.125 2.83e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Prci9g0988 zf-B_box 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0988 - - gmx:100805693 471.855