Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0954 ATGGATTCCTCTTCTTCTTCTTCCCCTAACTGGCTCGCTTTCTCTCTCTCCAACCCCTTATCTTCCTCCTCACACTTCCCTCTTTTCCCTTCCTTCACCTCTCCATCCCCTACACCCACTCTATCTCTAACAGGTAACGCCGTCGACTCGCCGGCCGAAACCAAGGATGGTGCGATCGGAGGAGCACCAACTAGTCTCTCGATGTTCACCGGGGGTCCTAAGTTCGAGGACTTCCTGGGCGGCGTCGGCGGAGCCACCCCCGCCCCCGCCTCTGCCACTGCCCCAATAGCGCCAGCGCCTCCGCAGTTCTCTGCCGACAACACTCTGAGCACGGTGGTGGAAAACGAGTTATACGATTCAGAGCTGAAGACGATAGCGGCCAGCTTTCTTCGCGGCTTCGCTTCGGGAGGAGGGCAAGCTGAGCAGCAACAGAAACAGGCTCAGCTAGTTCCGGCTGAGCCGTCCCCCAAGAAGAGCGTCGACACCTTCGGCCAACGCACCTCTATATACCGCGGCGTCACACGGCATAGATGGACCGGACGATATGAAGCTCATCTATGGGATAACAGTTGCCGGAGGGAAGGGCAAAGTCGGAAAGGAAGACAAGTCTATTTGGGTGGCTACGATAAGGAAGAGAAGGCGGCAAGAGCTTATGATCTCGCAGCCCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGATTTCAAACTACCAGAAAGAACTGGAAGAGATGAAGAACATGACAAGGCAAGAGTTTGTTGCTTCTCTTCGAAGGAGGAGTAGTGGATTCTCGAGAGGCGCCTCAATATATAGAGGAGTGACGAGACATCACCAGCATGGCCGATGGCAGGCAAGAATAGGCAGAGTCGCCGGAAACAAAGACCTTTACCTTGGCACTTTCAGCACTCAGGAGGAAGCAGCGGAGGCGTATGATATAGCAGCGATAAAGTTCAGAGGAATAAATGCGGTGACCAACTTTGACATGAGCCGCTACGACGTGAAGAGCATTGCCAACAGCAGCCTTCCGATCGGTGGATTGTCCGGCAAGAACAGGAACTCGACGGATTCTTCTCCGTCCGATGGAGTCGGACCTCGATCCACCGCCACCGTGGACGACCGAGACCTCTCCTCGGGAAACTCCTCAGTGACATTCGCATCCCAACCTCCTCCACCACCACCACCACCTCCTTCAGGCTGTAATAACAACTCTCTCACCTTCGCCATACCCATCAAACAGGACACTTCAGATCAATACTGGTCCTCGGTTCTCGCCGGGTACAACAAAAACCCTTCGTTAATCCAACCATCTTCCTCCACCAATGGTTCCGTGACATCTGTCCTTCCCTTCAACGTGGACCTCTCTACTCCCTCCAGCACGACCAGTGAAGGAAACAACAACAACAACAATAACAATGGGTTTTTCAGTGGAGGCGTGTTTGTTCAGCAGCAACAGAGTGGGAGTTCGAGTTCATTGATCCCATTGGCCACGCCCATAGCTTTAAATAGTAACCCTAGTTATGAGAGCTCTTCTGGTTATGGAAACTGGAGCATCATTGGGCCTACCCTGCACAGCTTCCAAACCCATGCAAAACCCAGTCTCCTTCAGACCCCAATTTTTGGCATGGAATGA 1635 0.5333 MDSSSSSSPNWLAFSLSNPLSSSSHFPLFPSFTSPSPTPTLSLTGNAVDSPAETKDGAIGGAPTSLSMFTGGPKFEDFLGGVGGATPAPASATAPIAPAPPQFSADNTLSTVVENELYDSELKTIAASFLRGFASGGGQAEQQQKQAQLVPAEPSPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYQKELEEMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGINAVTNFDMSRYDVKSIANSSLPIGGLSGKNRNSTDSSPSDGVGPRSTATVDDRDLSSGNSSVTFASQPPPPPPPPPSGCNNNSLTFAIPIKQDTSDQYWSSVLAGYNKNPSLIQPSSSTNGSVTSVLPFNVDLSTPSSTTSEGNNNNNNNNGFFSGGVFVQQQQSGSSSSLIPLATPIALNSNPSYESSSGYGNWSIIGPTLHSFQTHAKPSLLQTPIFGME 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0954 544 MobiDBLite consensus disorder prediction 387 401 - -
Prci9g0954 544 SUPERFAMILY DNA-binding domain 168 237 IPR016177 GO:0003677
Prci9g0954 544 SMART rav1_2 271 335 IPR001471 GO:0003700|GO:0006355
Prci9g0954 544 SMART rav1_2 169 241 IPR001471 GO:0003700|GO:0006355
Prci9g0954 544 FunFam AP2-like ethylene-responsive transcription factor 270 331 - -
Prci9g0954 544 MobiDBLite consensus disorder prediction 39 63 - -
Prci9g0954 544 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 128 422 - -
Prci9g0954 544 ProSiteProfiles AP2/ERF domain profile. 169 235 IPR001471 GO:0003700|GO:0006355
Prci9g0954 544 PRINTS Ethylene responsive element binding protein signature 311 331 IPR001471 GO:0003700|GO:0006355
Prci9g0954 544 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Prci9g0954 544 CDD AP2 270 331 IPR001471 GO:0003700|GO:0006355
Prci9g0954 544 MobiDBLite consensus disorder prediction 137 161 - -
Prci9g0954 544 Gene3D AP2/ERF domain 271 331 IPR036955 GO:0003700|GO:0006355
Prci9g0954 544 Gene3D AP2/ERF domain 169 237 IPR036955 GO:0003700|GO:0006355
Prci9g0954 544 FunFam AP2-like ethylene-responsive transcription factor ANT 168 237 - -
Prci9g0954 544 SUPERFAMILY DNA-binding domain 270 331 IPR016177 GO:0003677
Prci9g0954 544 CDD AP2 168 237 IPR001471 GO:0003700|GO:0006355
Prci9g0954 544 ProSiteProfiles AP2/ERF domain profile. 271 329 IPR001471 GO:0003700|GO:0006355
Prci9g0954 544 MobiDBLite consensus disorder prediction 344 406 - -
Prci9g0954 544 Pfam AP2 domain 169 227 IPR001471 GO:0003700|GO:0006355
Prci9g0954 544 Pfam AP2 domain 271 321 IPR001471 GO:0003700|GO:0006355
Prci9g0954 544 MobiDBLite consensus disorder prediction 344 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0954 Prci-Chr9 24252546 24256320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0954 116 544 AP2-EREBP Transcription Factor Family AT5G57390 57.333 3.13e-152 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Prci9g0954 AP2 4.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0954 K09285 - gmx:100803558 585.874