Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0890 ATGGAGAACATAGGCGACGAATTCAAGCATTACTGGGAGACGCAAATGTTCTACCAAACAGAAGAGCTCGACAGCAGCTGGGGACTGGACGAGCCAATCTCCGGCTACTACGACTCGAGCTCGCCGGACGGCGGTGCCTCTTCGTCGGCGGCCTCCAAGAACATCGTCTCGGAGAGGAATCGCCGGAAGAAGCTCAACGATCGGCTCTTCGCTCTTAGAGCAGTGGTTCCCCACATTAGCAAGATGGATAAGGCGTCGATAATAAAGGATGCTATAGAGTACATTCAAGACTTGCACAAACAAGAGAAAAGCATCGAAGCAGAGATAACGGAGCTCGAATCTGGGATGAACATGAACATGAACATGAACATGAACATGATGATGATGAGCAGCAACGGTGTAAATCAGAATTCAAGCTTCGAATACGAGCAAGACCTGCCTGTGCTTCTCAGATCCAAGAGGAACAAGACAGAGCAGCAGCTTTTTGAGTCCGTCAGCTCAAGAACTTCCCCCATTGAGGTCCATGAGCTAAGAGTGACATACATGGGAGAAAAGACAGTGGTGGTGAGCTTGACGTGCAGCAAGAGGACAGACACAATGGTAAAGCTGTGTGAAATGTTTGAATCCTTGAAGCTCAAGATTATTACTGCCAACATCACCTGCTTCTCTGGCAGGCTCCTCAAGACCGTCTTCATTCAGGCGGATGAAGAAGAGAAAGACGTTGTACAGATAAAGATCCAGGCAGCCATTGCAGCCCTAAATGATCTTGAAAGCCCAATGACCATGTAA 789 0.4842 MENIGDEFKHYWETQMFYQTEELDSSWGLDEPISGYYDSSSPDGGASSSAASKNIVSERNRRKKLNDRLFALRAVVPHISKMDKASIIKDAIEYIQDLHKQEKSIEAEITELESGMNMNMNMNMNMMMMSSNGVNQNSSFEYEQDLPVLLRSKRNKTEQQLFESVSSRTSPIEVHELRVTYMGEKTVVVSLTCSKRTDTMVKLCEMFESLKLKIITANITCFSGRLLKTVFIQADEEEKDVVQIKIQAAIAALNDLESPMTM 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0890 262 Coils Coil 95 115 - -
Prci9g0890 262 Gene3D - 46 115 IPR036638 GO:0046983
Prci9g0890 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983
Prci9g0890 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 118 IPR036638 GO:0046983
Prci9g0890 262 MobiDBLite consensus disorder prediction 40 55 - -
Prci9g0890 262 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 43 249 - -
Prci9g0890 262 SMART finulus 55 104 IPR011598 GO:0046983
Prci9g0890 262 MobiDBLite consensus disorder prediction 38 58 - -
Prci9g0890 262 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 46 116 - -
Prci9g0890 262 Pfam Helix-loop-helix DNA-binding domain 56 98 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0890 Prci-Chr9 23589462 23595473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0890 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 57.447 1.06e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci9g0890 HLH 8.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0890 - - csav:115725766 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci9g0890 9 23589462 23595473 Prci9g0890 9 23589462 23595473 ECH