Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0889 ATGGAGAACATAGGCGACGAATTCAAGCATTACTGGGAGACGCAAATGTTCTACCAAACAGAAGAGCTCGACAGCTGGGGACTGGACGAGCCAATCTCCGGCTACTACGACTCGAGCTCGCCGGACGGCGGTGCCTCTTCGTCGGCGGCCTCCAAGAACATCGTCTCGGAGAGGAATCGCCGGAAGAAGCTCAACGATCGGCTCTTCGCTCTTAGAGCAGTGGTTCCCCACATTAGCAAGATGGATAAGGCGTCGATAATAAAGGATGCTATAGAGTACATTCAAGACTTGCACAAACAAGAGAAAAGCATCGAAGCAGAGATAACGGAGCTCGAATCTGGGATGAACATGAACATGAACATGAACATGAACATGATGATGATGAGCAGCAACGGTGTAAATCAGAATTCAAGCTTCGAATACGAGCAAGACCTGCCTGTGCTTCTCAGATCCAAGAGGAACAAGACAGAGCAGCAGCTTTTTGAGTCCGTCAGCTCAAGAACTTCCCCCATTGAGGTCCATGAGCTAAGAGTGACATACATGGGAGAAAAGACAGTGGTGGTGAGCTTGACGTGCAGCAAGAGGACAGACACAATGGTAAAGCTGTGTGAAATGTTTGAATCCTTGAAGCTCAAGATTATTACTGCCAACATCACCTGCTTCTCTGGCAGGCTCCTCAAGACCGTCTTCATTCAGGCGGATGAAGAAGAGAAAGACGTTGTACAGATAAAGATCCAGGCAGCCATTGCAGCCCTAAATGATCTTGAAAGCCCAATGACCATGTAA 786 0.4835 MENIGDEFKHYWETQMFYQTEELDSWGLDEPISGYYDSSSPDGGASSSAASKNIVSERNRRKKLNDRLFALRAVVPHISKMDKASIIKDAIEYIQDLHKQEKSIEAEITELESGMNMNMNMNMNMMMMSSNGVNQNSSFEYEQDLPVLLRSKRNKTEQQLFESVSSRTSPIEVHELRVTYMGEKTVVVSLTCSKRTDTMVKLCEMFESLKLKIITANITCFSGRLLKTVFIQADEEEKDVVQIKIQAAIAALNDLESPMTM 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0889 261 MobiDBLite consensus disorder prediction 39 54 - -
Prci9g0889 261 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 115 - -
Prci9g0889 261 MobiDBLite consensus disorder prediction 37 57 - -
Prci9g0889 261 Coils Coil 94 114 - -
Prci9g0889 261 Gene3D - 45 114 IPR036638 GO:0046983
Prci9g0889 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Prci9g0889 261 SMART finulus 54 103 IPR011598 GO:0046983
Prci9g0889 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 117 IPR036638 GO:0046983
Prci9g0889 261 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
Prci9g0889 261 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0889 Prci-Chr9 23589460 23595473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0889 1 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 58.298 1.29e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci9g0889 HLH 8.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0889 - - zju:107421731 333.569