Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0863 ATGGAAGATGATGGGATGGCATGCAACACAAGGCTGAGTCTAGGGCTGGGAATAGGAGGTTATGTGATGCCATTAAAGAAGAAGCAGAAGTTAGAAGAAGCCATTAATAATCATCAGAAAGAGTTATTGATCAGTTCGAACACCAGAATCGATGATGAAGAAGATATTGAAAAGAGCGATCATAGGGATAGTTGCAGAAAGAAACTGAGACTCACGAAGGAGCAGTCCGCCATGCTTGAAGATAGCTTTAAGCTTCATCCCTCTCTCAACCCAGTCCAGAAACAAGAACTTGCTCAGCGATTGAATCTGAAGCCAAGACAGATCGAAGTTTGGTTTCAAAACAGAAGAGCAAGGAAAAAGTTGAAGCAAACGGAAGCAGACTGTGAGTTGCTGAGAAAATGGTGCGAAAATCTGAGAAACGAGAACAGAAGGTTGAAGAAAGAAGTGGAGGAACTACGTGCCATGAAAGTTGAAGCAACTAACAGTAGCAGTAGTAGTGGTATTGAACTGATCTCTAGAGCAGCTACGCTGGCTCTGTGTTCCTCTTGTGAGAAACCATTAATCAAATAA 570 0.4228 MEDDGMACNTRLSLGLGIGGYVMPLKKKQKLEEAINNHQKELLISSNTRIDDEEDIEKSDHRDSCRKKLRLTKEQSAMLEDSFKLHPSLNPVQKQELAQRLNLKPRQIEVWFQNRRARKKLKQTEADCELLRKWCENLRNENRRLKKEVEELRAMKVEATNSSSSSGIELISRAATLALCSSCEKPLIK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0863 189 Gene3D - 58 130 - -
Prci9g0863 189 Pfam Homeobox associated leucine zipper 122 156 IPR003106 GO:0006355|GO:0043565
Prci9g0863 189 CDD homeodomain 66 123 IPR001356 GO:0003677
Prci9g0863 189 SMART HOX_1 64 126 IPR001356 GO:0003677
Prci9g0863 189 Coils Coil 121 162 - -
Prci9g0863 189 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Prci9g0863 189 SUPERFAMILY Homeodomain-like 56 123 IPR009057 -
Prci9g0863 189 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Prci9g0863 189 Pfam Homeodomain 66 120 IPR001356 GO:0003677
Prci9g0863 189 SMART halz 122 165 IPR003106 GO:0006355|GO:0043565
Prci9g0863 189 Coils Coil 28 48 - -
Prci9g0863 189 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 39 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0863 Prci-Chr9 23200567 23202306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0863 48 185 Homeobox Transcription Factor Family AT4G37790 57.971 2.69e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci9g0863 Homeodomain 9.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0863 - K09338 pcin:129307836 200.29