Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0851 ATGATACCAACTTATCCTTATTCTCTTCCTCCTCCTCCTCCTATGCCTATTGTAGATCTTAATATTGTTGAAGATCAAGGCCATGATCTGATTTTTAGCCCAACCCACCAACCTTCTTCTTCTTCCTCTTCTCTATCATGCCCTATTCTCTTTAATCCCCAGGATCACGCAGGATATTCCTACTGGGAGTCCAATAACTTACAAAATGATCATGATCACGAGACTGGGAAGAATATTATTGGCTCAAGTGGATCATGGAATGATCCAGAAGATCATGAAAAGGGTGGTGTTGAGATCATCAGAAAGAGGGGCCTGAAGCTGAAGGTTTGGAAGAGATCAGAAGGATCAAAGAAGGAGGATGATGAAAATTATCATCAAACTGAGGATCATGATTCAGTGAAGTGGATGCCTTCAAAGATGAGAATGATGAGGAAGATGATGGCTCCTTCAGATCAAAAAGCTTCTTCTTCTTCTTCTTCTTCTGATATGAACATCCCACCTGTACTAGGCAACTCTCAGCAGATTATTAACTCAGAAGATCAGAATCAGAACCATCAGTCTACTCCAGGAACAGATAATAGTAGCAGCAGCAACAATTCTTCAACCCAAACTAACAGTAATACTCATCATCATCATAATAATATCACCGTTAGGGTTTGTGCTGATTGCCACACCACCAAGACCCCCCTTTGGAGAAGTGGACCAAGAGGCCCTAAGTCACTATGCAACGCTTGTGGGATTAGACAAAGGAAAGCAAGGCGAGCCATGGCGGCGGCCGCGGCTGCGAATGGGTCGCCCGATCTGCTGCAGGTGGCGGAGAAATCCACAGTGAAAGGGAACTACAAGTTTCACATCAACACAGAGATGAAAAAGAAGTCGAAATTCGAGCGTGAGACGACTCATCAGATGAGGAAGAAGCACAAGCCTGATCAAGATCATCATCAACAACAACATCAAGCCAAGGCAGCCAATGATAATAATAATTCAAGAGGCAGAACATCATCATCATCAATAATAAAGAAGTTTAGTTTTGAGGATTTCACAGTAAGCTTGATGAGCAAGAATTTGGCAGCTGCATCACAAGTTTTCCCTCAGGATGAGAAGGAGGCAGCAATTCTTCTCATGGCTTTATCTTGCAATGGCCTATTGAGCTAG 1155 0.4303 MIPTYPYSLPPPPPMPIVDLNIVEDQGHDLIFSPTHQPSSSSSSLSCPILFNPQDHAGYSYWESNNLQNDHDHETGKNIIGSSGSWNDPEDHEKGGVEIIRKRGLKLKVWKRSEGSKKEDDENYHQTEDHDSVKWMPSKMRMMRKMMAPSDQKASSSSSSSDMNIPPVLGNSQQIINSEDQNQNHQSTPGTDNSSSSNNSSTQTNSNTHHHHNNITVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAANGSPDLLQVAEKSTVKGNYKFHINTEMKKKSKFERETTHQMRKKHKPDQDHHQQQHQAKAANDNNNSRGRTSSSSIIKKFSFEDFTVSLMSKNLAAASQVFPQDEKEAAILLMALSCNGLLS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0851 384 SMART GATA_3 214 265 IPR000679 GO:0006355|GO:0043565
Prci9g0851 384 MobiDBLite consensus disorder prediction 288 335 - -
Prci9g0851 384 MobiDBLite consensus disorder prediction 73 99 - -
Prci9g0851 384 CDD ZnF_GATA 219 247 IPR000679 GO:0006355|GO:0043565
Prci9g0851 384 MobiDBLite consensus disorder prediction 150 213 - -
Prci9g0851 384 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
Prci9g0851 384 Gene3D - 218 256 IPR013088 GO:0006355|GO:0008270
Prci9g0851 384 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 380 - -
Prci9g0851 384 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Prci9g0851 384 ProSiteProfiles GATA-type zinc finger domain profile. 218 250 IPR000679 GO:0006355|GO:0043565
Prci9g0851 384 MobiDBLite consensus disorder prediction 111 138 - -
Prci9g0851 384 MobiDBLite consensus disorder prediction 288 319 - -
Prci9g0851 384 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 255 - -
Prci9g0851 384 MobiDBLite consensus disorder prediction 320 335 - -
Prci9g0851 384 MobiDBLite consensus disorder prediction 111 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0851 Prci-Chr9 23135266 23137361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0851 131 378 C2C2-Gata Transcription Factor Family AT4G26150 36.078 9.47e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci9g0851 GATA 5.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0851 - - pcin:129320693 617.846