Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0840 ATGCACCGCATGGACACTGTCTTCTCCCTCCCCGAGTCAGCCAGGGCTAACTTTCTGCAGTCTATAATGCAGTCCTCAGGCTGCTCATACATTTGTCTTTGGTCCTATGATTCCCTCTTATCCAATCGTTTGCTGTGCTTGGATGGATTGTTCAATGTAAGAATCAACCAAGCGAGCACCTCTTTGGGGAGTGTAGCTCAAAGGCTTTTTGACCAATATAGGAGTTTAGTATTTGATGTCAATGATAATGACCGAATTCCAGGACTGGCCTTCAAGAACCGCAGCTACCTTGAGCTGCAGCAACCAGATCTTCTGAGACTGGCATGGACACAAATACAGGCACAATTTTATCAGGAAGCAAGGATTAAGACTGCTGTCTTCATGGGGTGTAACAATGGAGAAATGGAACTTGGGTTCCCAAACATGTCTCAAGATGATATTCAGACAGCACTTAGGAATTGGTTCCCAGATGAATTTTCCAGATTACAGTCATCATCAAATCCGCAGCCAAACATTGATCAGAGTCAGAACCCACCTTCATCATCATCTTCTTCCTTGAGATCACTCTCCCTATCTGCAGGAAGCCCTGAATACTCATCCCTCCTGTTCAACATTCCTGGATCTTCCCCTCATTTCCCTCAAGATCAATCCCTCACAGCTTCTTCTTCTAGCTCACACCAGCAAGTCTTCCAAGCACTGGCTCAATCCACAGCACAGAGCAGTACATTCCCAACACCAGAAGGTGAAAATGATGCTATGATGAGAGCAATCCTTCATGTCCTTTCTACTAATAATCCTCCTCCTTCTACTCCAACCTCTCTTCTTCATCAACCCCACCACCGTCAGAATTTGCCTGATTATATGGTTCGTCCTGATCAGACTAGTGCCTTCAAGAGGTACAGCCCCATTATCCCGCGGCCTTCATCCCAAATGGGACCAGATCAGCTGAGGCAAAGTCTCTTTAAAAGGTCATTGACGTTCTTTAGAGGCTTGAATTTCATGAGAATGAGAGAAAGTGTTCAAACAACAACTCGTCCCAGCAGTACACAGCTTCATCACATGATTTCAGAAAGAAGAAGACGTGAGAAGCTCAACGAGAACTTTCAAGCTCTTAGATCACTTCTTCCTCCTGGAACTAAGAAAGACAAAGCATCAATACTTACAACAGCGAAGGAAGCACTGACCTCTTTAATGGCGGAGATAGAAAAGCTTAGAGAGAGGAACAAGCAGTTGGAGGTGGCAGCAACATCATCATCATCATCATCAATGGCGGCTCGTCCGGTAGCGAAAGAAGCAAGTGATGATCATGAAATCTTCAATGAGAGGTTAAATGTCAGAATTTCACACGAACTATCAGAATCAAGCTCGTCGGAACAAGAGAGAATCGCAGATTTGGAAGTGACAGTGAGGGGACAAAGTTCTCAAGTCGATATTCTGATTCGATTACTGGAATTTTTGAAACAGGATCAAAATTTGAGCTTGATTTCCATGGAAGCTAACACTTATTTAGCTCACGCCAATTCCTTCAACCGAATCACAATAAGGCTAAGGGTTGAGGGAAGTGAATGGGACGAGTCTGCCTTCCAGGAAGCAGTGAGAAGGGTGGTTGCTGACCTGGCACAGTAA 1626 0.4471 MHRMDTVFSLPESARANFLQSIMQSSGCSYICLWSYDSLLSNRLLCLDGLFNVRINQASTSLGSVAQRLFDQYRSLVFDVNDNDRIPGLAFKNRSYLELQQPDLLRLAWTQIQAQFYQEARIKTAVFMGCNNGEMELGFPNMSQDDIQTALRNWFPDEFSRLQSSSNPQPNIDQSQNPPSSSSSSLRSLSLSAGSPEYSSLLFNIPGSSPHFPQDQSLTASSSSSHQQVFQALAQSTAQSSTFPTPEGENDAMMRAILHVLSTNNPPPSTPTSLLHQPHHRQNLPDYMVRPDQTSAFKRYSPIIPRPSSQMGPDQLRQSLFKRSLTFFRGLNFMRMRESVQTTTRPSSTQLHHMISERRRREKLNENFQALRSLLPPGTKKDKASILTTAKEALTSLMAEIEKLRERNKQLEVAATSSSSSSMAARPVAKEASDDHEIFNERLNVRISHELSESSSSEQERIADLEVTVRGQSSQVDILIRLLEFLKQDQNLSLISMEANTYLAHANSFNRITIRLRVEGSEWDESAFQEAVRRVVADLAQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0840 541 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 110 538 IPR044658 -
Prci9g0840 541 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 416 IPR036638 GO:0046983
Prci9g0840 541 CDD bHLH_AtbHLH_like 353 405 IPR045239 -
Prci9g0840 541 MobiDBLite consensus disorder prediction 204 247 - -
Prci9g0840 541 MobiDBLite consensus disorder prediction 412 433 - -
Prci9g0840 541 MobiDBLite consensus disorder prediction 412 426 - -
Prci9g0840 541 MobiDBLite consensus disorder prediction 204 249 - -
Prci9g0840 541 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Prci9g0840 541 Gene3D - 347 420 IPR036638 GO:0046983
Prci9g0840 541 Pfam Helix-loop-helix DNA-binding domain 352 397 IPR011598 GO:0046983
Prci9g0840 541 MobiDBLite consensus disorder prediction 160 191 - -
Prci9g0840 541 Coils Coil 387 414 - -
Prci9g0840 541 SMART finulus 354 403 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0840 Prci-Chr9 23011809 23016988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0840 4 541 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.434 2.86e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci9g0840 HLH 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0840 - - gmx:100807098 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci9g0840 9 23011809 23016988 Prci9g0840 9 23011809 23016988 ECH