LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci9g0833	ATGGAATTGGTGAAACCACTTTGCGCTGCAATGGTTTCTCCTCCTATTATTGAAGAAGGTGAGTTTGAGAAGGAAGAACTTGGTCAAAAGATTCATGTAGGAACACACCTTTCTCTAGATGATGGTATGGAAAATAGTGAACCGTTGAATTTGAGTATTGAACTTGAGAGAATACAAAAGGAAATGGAATTGGTGAGACCTGTTTCTGCTACAGTTGTTTCTCTTCCTGCTACTGAGGAGGGTAACTTTGAGAAGAAAGAACAACATGGTCAAAATGTACCCGAGGCTATGCAATTTTTGGTTGATCAGGGTACGAATAATAAAGAATCAAATTCAAGTATAGAGGATGAGAAACAAAAAAGGGAAATAGACTCAGCAATACCAGTTTGTGCTGCAACGATTTCTCTTCCTACTTCTGAAGAGGGTGAGTTTGAGAAGGAAGAACAACACAGTCAAAAGGCTTCTGAAGCAATGCATGTTTCGGTAGATCAGGCTATGAATAGTGAAGCATTGATTTCAAGTATAAAGCTCAATAGACAACAAAAGGAAATGGCAGTGTTGAAACCTGTTTCGGCTGCAATTATTTCTCTTCCTAATACTGAAGAGGGGGAGTTTAAGAAGGATGAACAACAGGGTCAAAAGGTTCATGAATCAATGCAATTTCCCGTAGATCAGGATATGAATAATGACACATCAAATTCACATATAAAGCATAATAAACAACAAAAGGAATTAGGCTCAGTGAAACCAGTTGGTGCTGCAATGGTTTCTCTCCCTACTACCAACGAGGTTGATTTTGAGAAGGAAGAACATGGTCAAAAGGTTCCTGAGGTAATGCAATTTTCTTTTGTGGGTATGAATAATAAAGCATCAAATGCAAATCTAAAGCATGAGAAACAACAAGAGGAAATGGACTCGGCGAAGCCAGTCTGTGCTGTAACTGTTTCTCTTCATACTACCAAAGAAGGTGAGTTTGAGAAGGAAGAACAACATGGTCAAAAGGCTCCTGAAGCAATGCAACTTCCTGTAGATCAGGGTATGGATAGCGAACTATTGATTTTAAAAAGAAAGCCTAAAAGACAACAAAATGAAATGGAATTGGGGAGACCTGCCTGTGCTGCAGTTGTTTCTCTTCTTGATATTGAAAAGGATGAACTTGAGGAGGAAGAACATAATAGTAGTGATGCGTCCAAGCTCACTAAGACATATGTAAGGAAGAGTAAGAAGAGGGGTTTGGGCCAGTTGGGCTTGGACCCATCAGGTAGAAAGGTCCCTGAAGCAATTCACTTGTCTGCAAATCAGGGTATGAATGGTGAAACATTGAACTTGGGCGGAGACAGTGAAGAGATGTCATCAATGGACATTGATATTTTGGATGCTAAACATATAATGCAGCATGAAGAAAAGCAGCCAGACAAAATAACTTGTGCAAATGATGCAACATTTTCCGATCATCCAGATAAGGAAGAAGACATTGAAGAGGGAGAAATTTCAGGTGACTTTAGAATGGATGAGAATTCAATTGATGTATCTTCTGTAGATTCTTTGTTGATAGAACAGAGAAAACATTATGTACAAAAGCCCAAACATATTGAAAATATAGTATTTCCTTTTAATAAACAGAAAGAAGAAAAAGAAAAAGAATACAAATCAACTCAAGATGCTTGTAACAGTGGACTTATGGAACCTAGGAAAAGTGATAAAAATTATTTTCCAAATGGAGTTGATCTTGGAATGTCTCGGGAAATTATTGATTATAGAGATTTAGTGGAGCATGGTTCTGTGGTGATTGGAAAAAGTGAAGACCGTGGAATTAAAGGGGTTGTTGGCTTGCCACCAACTTTTTCTAACAAAAAAGTCTTGCCTAAAGTTGTTTTGGAAGAAGCCACTGAAGATCATCAAGACACATCTGCAGTAAAGAAAGCCGGCATCAGTTGTAAGAAAAAACGTGGTCCTGTTACTGAGGAAAGGAAGGCTAAAAAGAAGGAAAAGAAAAGAAAGAAGAGGGCAGAAAAGAACAGAAAACTTGGTGTTAAAAGGTTGAAGTTGCAGCCAGTACAGAAACCAAAAACTATCACATATTGCCGCCATTATATGCAGGGAAGGTGCCACGAGGGTGACAAGTGCAAGTTCTCACATGACATAGTGCCCCTGACGAAATCAACGCCATGCTGTCATTTTGCTCGTCACTCTTGCATGAAAGGTGATCATTGTCCATTTGATCATGACCTCTCCAAGTATCCTTGTAGCAATGTTGTGACAAGAGGTTCTTGCAGCAGAGGAAATGCTTGTATGTTTTCACACCAGATACCAACTAAGCAAGATGTTGTTACATCTTCAAATGATGGCAAGCCTGAGTTGAAGCCTAAACTAGGAGGAAATACAAAATTGAGCAAGTCACCGAACATCAGCAGCAGCAGTGGTTCCCAGTTCAAACAGATCTCTGATTCAAAAGGCATTCAATGTCACATCAATTCAGAAAAAGAGGTGGCAGACACTGTAAAGAAACTACGGACAGTGCCCCCTAAAGGGATTAGTTTCATCAATGTTTCAAAATCATCGTCTCCAAAACAAGGGATGGTAACACCAAACAAGGAAAGTTCTGTTCAAATTGGGAACCTTACTGGCCAAAGTGCATCTGGTGCAGCTTTAAACTCGGAGAATCCTGAGAAAACGCCAGTGGTGGCACCTAAGGGAATTAACTTCCTTTCATTTGGAAAAGGTCGTGTTTCCAGTTTCAAAAGTACTGTTTGCTCCTTTTTGGATAAGGAAAATGGTATCAGGTTGTCTCACAAAGAAAATTTAGGTACGCCTGATCATGCATCTCTGGAGAAGGATGATTGCGGTAAAGTTGGCAGTGGGACAAAGCAAAGTATGCTGCAGACTGCTCTGCGCTCAAATGAGATTTTAAAGCAAAATCAATGTATAGCTGAGGGAATGAATTTGGATTTTCGAGGAAAAGCTTCTATAGATCATTATGGCAGTGATGTGCAATTTAGCTCAACCTCTCATCAGGATCACAGTCTTAGTAGATCAGTGCAAAAGGGAGCAAAGGCATATACTCCTCAGACCTCAACCGTTACCTCATCCATGCTTCCAACTTCTCCATTGCTTTCAGGCCAATCATCAGAACGCCTAGCATCTGGGCATCATAAGCACGTACTTAACTCGGCCCAAAGGGCACTGTTATCAACTCTATCATTTGCAGCAGAGCACGAGTCCAATATTAAGCTAAAATTCCCTGTTGGTGCATCAGCTGTGAAATTAGAGATGAACAAGGATGTACAGCAGTTCATACATCCAAAAATGTCAGGTAGTTTATGA	3324	0.3989	MELVKPLCAAMVSPPIIEEGEFEKEELGQKIHVGTHLSLDDGMENSEPLNLSIELERIQKEMELVRPVSATVVSLPATEEGNFEKKEQHGQNVPEAMQFLVDQGTNNKESNSSIEDEKQKREIDSAIPVCAATISLPTSEEGEFEKEEQHSQKASEAMHVSVDQAMNSEALISSIKLNRQQKEMAVLKPVSAAIISLPNTEEGEFKKDEQQGQKVHESMQFPVDQDMNNDTSNSHIKHNKQQKELGSVKPVGAAMVSLPTTNEVDFEKEEHGQKVPEVMQFSFVGMNNKASNANLKHEKQQEEMDSAKPVCAVTVSLHTTKEGEFEKEEQHGQKAPEAMQLPVDQGMDSELLILKRKPKRQQNEMELGRPACAAVVSLLDIEKDELEEEEHNSSDASKLTKTYVRKSKKRGLGQLGLDPSGRKVPEAIHLSANQGMNGETLNLGGDSEEMSSMDIDILDAKHIMQHEEKQPDKITCANDATFSDHPDKEEDIEEGEISGDFRMDENSIDVSSVDSLLIEQRKHYVQKPKHIENIVFPFNKQKEEKEKEYKSTQDACNSGLMEPRKSDKNYFPNGVDLGMSREIIDYRDLVEHGSVVIGKSEDRGIKGVVGLPPTFSNKKVLPKVVLEEATEDHQDTSAVKKAGISCKKKRGPVTEERKAKKKEKKRKKRAEKNRKLGVKRLKLQPVQKPKTITYCRHYMQGRCHEGDKCKFSHDIVPLTKSTPCCHFARHSCMKGDHCPFDHDLSKYPCSNVVTRGSCSRGNACMFSHQIPTKQDVVTSSNDGKPELKPKLGGNTKLSKSPNISSSSGSQFKQISDSKGIQCHINSEKEVADTVKKLRTVPPKGISFINVSKSSSPKQGMVTPNKESSVQIGNLTGQSASGAALNSENPEKTPVVAPKGINFLSFGKGRVSSFKSTVCSFLDKENGIRLSHKENLGTPDHASLEKDDCGKVGSGTKQSMLQTALRSNEILKQNQCIAEGMNLDFRGKASIDHYGSDVQFSSTSHQDHSLSRSVQKGAKAYTPQTSTVTSSMLPTSPLLSGQSSERLASGHHKHVLNSAQRALLSTLSFAAEHESNIKLKFPVGASAVKLEMNKDVQQFIHPKMSGSL	1107

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci9g0833	1107	MobiDBLite	consensus disorder prediction	775	812	-	-
	Prci9g0833	1107	ProSiteProfiles	Zinc finger C3H1-type profile.	718	745	IPR000571	GO:0046872
	Prci9g0833	1107	ProSiteProfiles	Zinc finger C3H1-type profile.	748	771	IPR000571	GO:0046872
	Prci9g0833	1107	SMART	c3hfinal6	690	715	IPR000571	GO:0046872
	Prci9g0833	1107	SMART	c3hfinal6	718	744	IPR000571	GO:0046872
	Prci9g0833	1107	SMART	c3hfinal6	746	770	IPR000571	GO:0046872
	Prci9g0833	1107	SUPERFAMILY	CCCH zinc finger	689	714	IPR036855	GO:0046872
	Prci9g0833	1107	Gene3D	-	647	719	-	-
	Prci9g0833	1107	Pfam	CCCH-type zinc finger	695	714	IPR041367	-
	Prci9g0833	1107	Coils	Coil	653	673	-	-
	Prci9g0833	1107	MobiDBLite	consensus disorder prediction	795	812	-	-
	Prci9g0833	1107	MobiDBLite	consensus disorder prediction	660	675	-	-
	Prci9g0833	1107	MobiDBLite	consensus disorder prediction	637	675	-	-
	Prci9g0833	1107	FunFam	C3H-type transcription factor	647	718	-	-
	Prci9g0833	1107	Gene3D	-	720	783	-	-
	Prci9g0833	1107	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI	122	1093	IPR045124	GO:0003723\|GO:0045892
	Prci9g0833	1107	ProSiteProfiles	Zinc finger C3H1-type profile.	689	716	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci9g0833	Prci-Chr9	22972413	22979707	Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Prci9g0833		zf-CCCH_4	3.3e-07	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci9g0833	-		-	pcin:129320444	2099.71