LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci9g0780	ATGAATAAAGGAAGCTTAGGCCCAAATCTCAAACTCACTGTTCCTGCATATAATCAAGTTTCTTTCGCCAAGTTTCTGACTGAGAGCGGTACCTTCAAGGATGAGGATCTGCTAGTCAACAAGAATGGTGTTCGAATTATCTCTCAGTGTGAAGTTGAAGCTCCACCCCCTATCACGCCGCAAGACAACCAGTTACGTTTAGAAGACATAGACACAATCAAAGTGGTTGGAAAGGGAAGCAGCGGCATAGTGCAATTGGTGCAACACAAATGGACTAGTCAGTTTTTTGCATTAAAGGTTATTCAAATGAATATTGAGGAGTCTATGCTCAAGCAGATAGCACAAGAGCTGAAAATTAATCAATCAGCTCAGTGTCCTTATGTTGTTGTCTGTTACCAGTCCTTCTACGAAAATAGTGTTATATCAATCATCTTAGAGTACATGGATGGAGGGTCTCTAGCAGATTTTCTGAAGAAAGTGAAAACAATTCCGGAGGCATACCTTGCTGCCATTTGCAAGCAGGTGCTGAAGGGTCTAATATATCTTCACCATGAAAAGCATATTATTCACAGGGACTTAAAGCCTCATAATTTGTTGATAAATCACAGAGGGGAAGTAAAGATCACTGACTTTGGTGTCAGTGCAATCATGGAAAGTACATCTGGTCTTGCCAACACTTTCATTGGAACACAGATCTATATGTCTCCTGAGAGAATCAATGGATCCCAGTGTGGCTACAACTACAGAAGTGACATATGGAGTTTGGGACTAATATTGCTTGAGTGTGCTACGGGGAGGTTTCCATTTACGCCACCTGATCAAGGAGACAGATGGGAAAATGTTTTCCAGCTTATTGAAGCTGTTGTTGAAGCTCCTCCTCCCTCTGCTTCACCTGATCAATTTTCTCCAGAGTTCTGTTCATTTATATCAGCATGTTTGCAGAAAGATCCAAAGAATAGATTGTCAGCTCAAGAACTTATGAGACTTCCATTTATCCGTATGTATGAGGATTTGGATGTAGATCTTTCAGCTTACTTCTCCAATGCTGGATCCCCCCTTGCTACTTTATAA	1071	0.4108	MNKGSLGPNLKLTVPAYNQVSFAKFLTESGTFKDEDLLVNKNGVRIISQCEVEAPPPITPQDNQLRLEDIDTIKVVGKGSSGIVQLVQHKWTSQFFALKVIQMNIEESMLKQIAQELKINQSAQCPYVVVCYQSFYENSVISIILEYMDGGSLADFLKKVKTIPEAYLAAICKQVLKGLIYLHHEKHIIHRDLKPHNLLINHRGEVKITDFGVSAIMESTSGLANTFIGTQIYMSPERINGSQCGYNYRSDIWSLGLILLECATGRFPFTPPDQGDRWENVFQLIEAVVEAPPPSASPDQFSPEFCSFISACLQKDPKNRLSAQELMRLPFIRMYEDLDVDLSAYFSNAGSPLATL	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci9g0780	356	CDD	PKc_MAPKK_plant_like	68	336	-	-
	Prci9g0780	356	SMART	serkin_6	70	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci9g0780	356	FunFam	Mitogen-activated protein kinase kinase 6	40	149	-	-
	Prci9g0780	356	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	16	336	-	-
	Prci9g0780	356	ProSiteProfiles	Protein kinase domain profile.	70	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci9g0780	356	ProSitePatterns	Protein kinases ATP-binding region signature.	76	99	IPR017441	GO:0005524
	Prci9g0780	356	Gene3D	Phosphorylase Kinase; domain 1	48	149	-	-
	Prci9g0780	356	Pfam	Protein kinase domain	72	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci9g0780	356	SUPERFAMILY	Protein kinase-like (PK-like)	61	338	IPR011009	-
	Prci9g0780	356	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	188	200	IPR008271	GO:0004672\|GO:0006468
	Prci9g0780	356	PRINTS	Tyrosine kinase catalytic domain signature	145	158	IPR001245	GO:0004672\|GO:0006468
	Prci9g0780	356	PRINTS	Tyrosine kinase catalytic domain signature	182	200	IPR001245	GO:0004672\|GO:0006468
	Prci9g0780	356	PRINTS	Tyrosine kinase catalytic domain signature	250	272	IPR001245	GO:0004672\|GO:0006468
	Prci9g0780	356	FunFam	Mitogen-activated protein kinase kinase 6	151	351	-	-
	Prci9g0780	356	Gene3D	Transferase(Phosphotransferase) domain 1	150	352	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci9g0780	Prci-Chr9	22411975	22417789	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci9g0780	1	327	MAP Kinase Kinase Gene Family	AT4G29810	66.071	3.51e-166	465

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Prci9g0780		Pkinase	2.2e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci9g0780	K20603		-	gmx:100789734	587.03