Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0764 ATGAAGCCGTTTCTGTCATTGAATCATACTGATCCTGACGTCAATTGTTCGAACCTTGATTCTAATCACTCAATGGCTCACGTTCCTTATCCATATGGCGATCCTTTTTATGGCAGTTCTCTAGTGTCTTATGGATCACAGGCTATTAATCAACCCCAAATGGTTCCACAAATGTTGGGGCTTGCATCTACAAGAGTTGCATTACCACTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGAATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGCCGAAAGCCATACCTTCACGAGTCTCGGCATCGCCATGCTTTGAACCGGGTTAGGGGATCTGGAGGTCGCTTTCTCAGCACCAGACAGCTTCAACAATCCAATGCACAAGTTGTGACGAGTGCCAATTCTGGCTCAGACTCTGTCAACTTGTATCAAAAGAAAGATGCATCTGAAGTGGAAATTATTCATCCCTCAAGGACCGGCACAGGTGAAAATGCATCTTCTATCTCAACCTGCTCTGACATGACAAGTGGATCCAGTAACAATGTCAATTTTAGGCAGCCGGAGTATACGTTCCTGGGAAACTCTCCAAACATGGGCAGGCATCACAATGCAGTGGTGGACTCACCTTTGGCAGGACCCAGCAACGCGCACCAATTGTCCGGTGAGGGCTGA 717 0.463 MKPFLSLNHTDPDVNCSNLDSNHSMAHVPYPYGDPFYGSSLVSYGSQAINQPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTRQLQQSNAQVVTSANSGSDSVNLYQKKDASEVEIIHPSRTGTGENASSISTCSDMTSGSSNNVNFRQPEYTFLGNSPNMGSXHHNAVVDSPLAGPSNAHQLSGEG 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0764 239 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Prci9g0764 239 MobiDBLite consensus disorder prediction 172 239 - -
Prci9g0764 239 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Prci9g0764 239 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Prci9g0764 239 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Prci9g0764 239 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Prci9g0764 239 MobiDBLite consensus disorder prediction 174 217 - -
Prci9g0764 239 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Prci9g0764 239 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 193 IPR001289 GO:0003700|GO:0006355
Prci9g0764 239 Gene3D - 74 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0764 Prci-Chr9 22275625 22280243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0764 17 140 CCAAT-HAP2 Transcription Factor Family AT1G17590 57.143 2.23e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci9g0764 CBFB_NFYA 3.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0764 K08064 - gmx:100792905 297.36