Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0730 ATGGGATTGGGAAACCCAAGTCCTAACGACGTCGTTTTACGTGCAACGAAGGCATGGTTAATAACAGGCTCGGAAGTCGGAAGCGGAAAGAAGCCTGGTCAGTCTCCTTATTTCATTGCCGGAGGATTCACTCTGCACGCCAAGCTGGATAGGCACAGAGGAGACCGCTATGGCAACACCAATCACGATTCTCACCCATATCGTCAGTCCAGAGCTCCATCGCGCTTCTCCGACGCACCCTTCAACAATCGTGGCGGAGGAGCCTCTCACCACCGTCAGTTTGACAGCCCACCCCGTCGCTCTCCTGGAAGAGGTGCGGGGTTCCGATCACCGGGTTTTGGCGGCAGCGATGGGCTCAGGCCAGTGAGTGGGGAGGGTCCTGGAGGGTTTGGGTTCAACGGTCGTCAGGGACAGCCGTTGTCCGGTCAGAAACGAGGGTTTCCTTTCTCTGGACGTGGAGGGTCGCCGGACCGTTTTGGTGGGGAAAGTTTTGCAAAACTTTTTGTTGGATCTGTACCGCGGACAGCAACTGAAGAAGATATTCGGCCTTTGTTCGAGCAACATGGGAATGTTATTGAGGTTGCTCTGATCAAGGATAGAAAGACCGGACAGCAGCAAGGTTGTTGTTTCATAAAGTATGCTTCCCCTGATGAAGCTGATCAGGCAATTAAAGCACTGCACAATCAACATATTCTTCCTGGAGGTGTTGGTCCAATCCAAGTGAGATATGCTGATGGTGAACGGGAGCGCCTTGGTGCAGTTGAATACAAATTATTCGTGGGCTCTCTGAACAAACAGGCTACAGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGACGGGTTGAAGATGTTTATCTGATGCGTGATGAGAAGAAGCAAAGCCGTGGATGTGGTTTTGTTAAATACTCTCACAGAGATATGGCTCTGGCAGCTATAAATGCACTTAATGGAATTTATACAATGAGAGGTTGTGATCAGCCTTTAACTGTACGATTTGCTGATCCTAAGAGACCTCGACAAGGGGATTTAAGGGGTCCTGCATTTAGTCCAAGATTTGAGGTACCAGGTCCTAGACATCCAGCATTTAGTCCAAGATTTGAAGCACCTAGTTCTGGACCTCCATTCAGTGTTAATGATCCCATGGGCGATCAAGCCTCTGCTCCCAATGCCTGGCGTCCAATGCATCCTTCAAATATGGGGCCGTCATCTATCACTGGTCTGCATAACATGAGGCCTCCATTGCTTCCAAGATCTGGTGACATGGACATGGCATTGGCTATGAATGCAGGTGGTCCTGTGAATGGCTTTGGAGGCCCTTCAAATGGTCCTTTTCAAAGACAAGCTCTGTCATCGATGTCACAACAGAATTTCAATCAAAACATTCCACATATTCCACCAGCCAGCCAACAAATGTCGCCACTGCAGAAGCCTATTCAATCACCTAAGGACAAGCCTTCTTCCCTCCAGATGTACCCTCCAGCACCAATCCCCTACTCACAAACACCACCTCTTGCATCATTTAGACAGCCTCAAGCACAGCAGGGTGCTTCTTCTGCTACAACTGCCCAGGGCCATGCTCCTTTAGACACCAGCTTGCAAGCAAATACAACATTGACAACTACAAATCAACAGCAACTATCTACCTCTATGCCTCAGCAGTCTCCGTCTCAGTTGGCACAAATGTTGTCACAACAAACTCAGACTTTGCAAGCAAGCTTTCATTCATCTCAGAAGGCCTTCTCCCAGCTTCAACAGCAACTACAAATGATGCAACCCTCAAGTCAAGGTTTAACATTACAGCAAAATGCAGAATCTATGAAAAAACAGCCTCAGTGGACGGGGGCTGCACCAACTGCAGATGTGCCTTCATCCTTGTCTGCTTCTGCTGTACCTGCAATAAATCAGAACATAGCTCCTGCAAAATGTGATTGGACAGAGCATATCTCTCCTGAGGGCTTCAAGTACTATCACAATAGTGTTACTGGTGAAAGTCGGTGGGAGAAACCTGAAGAGTTGACGTTATCCGAACAGCAAAAGCCATCTGTTCAGCAATCTCAAAACCAGTCACAGCCTCCAATATCACCTCAGCAAGTTCCTCAAATGCAACAATTACAGCCTCAAGGCCAACTCCAAGGACAGGTTCTCCAGCAACAGTACCAGGCATATGCAGTTGCTGGTCATCAAAATGTTCAGGGAATGTATGCTATGCAAGAGTGGATGTGGAAGGATAAGCCAGCAGGGATTTGA 2250 0.4809 MGLGNPSPNDVVLRATKAWLITGSEVGSGKKPGQSPYFIAGGFTLHAKLDRHRGDRYGNTNHDSHPYRQSRAPSRFSDAPFNNRGGGASHHRQFDSPPRRSPGRGAGFRSPGFGGSDGLRPVSGEGPGGFGFNGRQGQPLSGQKRGFPFSGRGGSPDRFGGESFAKLFVGSVPRTATEEDIRPLFEQHGNVIEVALIKDRKTGQQQGCCFIKYASPDEADQAIKALHNQHILPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRQGDLRGPAFSPRFEVPGPRHPAFSPRFEAPSSGPPFSVNDPMGDQASAPNAWRPMHPSNMGPSSITGLHNMRPPLLPRSGDMDMALAMNAGGPVNGFGGPSNGPFQRQALSSMSQQNFNQNIPHIPPASQQMSPLQKPIQSPKDKPSSLQMYPPAPIPYSQTPPLASFRQPQAQQGASSATTAQGHAPLDTSLQANTTLTTTNQQQLSTSMPQQSPSQLAQMLSQQTQTLQASFHSSQKAFSQLQQQLQMMQPSSQGLTLQQNAESMKKQPQWTGAAPTADVPSSLSASAVPAINQNIAPAKCDWTEHISPEGFKYYHNSVTGESRWEKPEELTLSEQQKPSVQQSQNQSQPPISPQQVPQMQQLQPQGQLQGQVLQQQYQAYAVAGHQNVQGMYAMQEWMWKDKPAGI 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0730 749 ProSiteProfiles WW/rsp5/WWP domain profile. 639 672 IPR001202 GO:0005515
Prci9g0730 749 SMART ww_5 640 672 IPR001202 GO:0005515
Prci9g0730 749 FunFam Flowering time control protein FCA 252 342 - -
Prci9g0730 749 FunFam flowering time control protein FCA isoform X2 160 251 - -
Prci9g0730 749 SUPERFAMILY RNA-binding domain, RBD 151 250 IPR035979 GO:0003676
Prci9g0730 749 MobiDBLite consensus disorder prediction 676 706 - -
Prci9g0730 749 Pfam WW domain 644 670 IPR001202 GO:0005515
Prci9g0730 749 SMART rrm1_1 257 332 IPR000504 GO:0003723
Prci9g0730 749 SMART rrm1_1 166 242 IPR000504 GO:0003723
Prci9g0730 749 CDD WW 642 672 IPR001202 GO:0005515
Prci9g0730 749 MobiDBLite consensus disorder prediction 503 564 - -
Prci9g0730 749 PRINTS Paraneoplastic encephalomyelitis antigen family signature 276 288 IPR002343 GO:0003723|GO:1990904
Prci9g0730 749 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 180 IPR002343 GO:0003723|GO:1990904
Prci9g0730 749 PRINTS Paraneoplastic encephalomyelitis antigen family signature 261 276 IPR002343 GO:0003723|GO:1990904
Prci9g0730 749 PRINTS Paraneoplastic encephalomyelitis antigen family signature 317 334 IPR002343 GO:0003723|GO:1990904
Prci9g0730 749 MobiDBLite consensus disorder prediction 53 156 - -
Prci9g0730 749 SUPERFAMILY RNA-binding domain, RBD 256 352 IPR035979 GO:0003676
Prci9g0730 749 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 336 IPR000504 GO:0003723
Prci9g0730 749 MobiDBLite consensus disorder prediction 332 420 - -
Prci9g0730 749 Gene3D - 639 687 - -
Prci9g0730 749 MobiDBLite consensus disorder prediction 458 564 - -
Prci9g0730 749 Gene3D - 254 343 IPR012677 -
Prci9g0730 749 Gene3D - 161 253 IPR012677 -
Prci9g0730 749 MobiDBLite consensus disorder prediction 667 706 - -
Prci9g0730 749 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 246 IPR000504 GO:0003723
Prci9g0730 749 MobiDBLite consensus disorder prediction 458 487 - -
Prci9g0730 749 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 258 324 IPR000504 GO:0003723
Prci9g0730 749 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 230 IPR000504 GO:0003723
Prci9g0730 749 MobiDBLite consensus disorder prediction 592 624 - -
Prci9g0730 749 MobiDBLite consensus disorder prediction 63 77 - -
Prci9g0730 749 SUPERFAMILY WW domain 644 675 IPR036020 GO:0005515
Prci9g0730 749 ProSitePatterns WW/rsp5/WWP domain signature. 645 670 IPR001202 GO:0005515
Prci9g0730 749 PANTHER RNA BINDING PROTEIN 84 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0730 Prci-Chr9 21953667 21968393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0730 163 365 Eukaryotic Initiation Factors Gene Family AT1G71770 26.389 3.11e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0730 - - pcin:129319669 1363.59