Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0687 ATGTTGGCAAATCATTTCCAGAACGGTATTGAAACGGCGAAGCATGTTTGGTCGCGAATTCCGAACTCGGAGGAATCCCAAGACCAGGACGACACTCTTGGCTTGTTGAAGAAGAGTGACGGAAGCGGCGTTGAGAGCCTTGATTATGAAGTCATAGAGAATTATGCTTATCGAGAAGAACAGGCGCTAAGAGGGAAGCTGTATATGGGCTATTTGTTGGTGGTGAAATGGTTCTTTGCTTTGCTCATAGGCGTTGGTACTGGAATTGCTGCTGTTTTCATCAATATTTCTGTTGAAAACTTCGCTGGCTGGAAGTTTTCATTGACATTTCATATAATTCAGAAATCGTATGTGGTGGGCTTTTTGGTATATGTCCTGATCAACTTGGTTTTGGTCTATTCCTCTGTATATATTATCACACAATTTGCTCCAGCAGCAGCTGGATCTGGTATTCCTGAAATTAAGGGTTACTTGAATGGAGTTGATATTCATGGAATCCTCCTTCTCAGAACCTTGATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGCCTTGCTTTGGGTAAAGAAGGTCCTCTTGTGCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGCGGATCTGCCAAGTATCATCTAAATTCAAGGTGGTTTCAAGTATTCAAAAGTGATCGGGATCAGCGAGATCTTGTAACTTGTGGGTGTGCAGCTGGAGTAGCCGCTGCATTTAGAGCTCCAGTTGGTGGTGTTTTGTTTGCATTGGAAGAGGTAACATCTTGGTGGAGAAGTCAACTGATGTGGCGTGTCTTCTTCACTTCTGCTGTTGTGGCTGTTGTGGTGCGTACTGCAATGGGGTGGTGTAAGAGTGGAAAGTGTGGACATTTTGGCTCGGGTGGATTCATCATATGGGATATATCAGGTGGTCAAGAGGATTATTCCTTTTCTGAGTTACTACCCATGGCTGTTATTGGGGTTATCGGAGGACTGCTAGGAGCCTTATTTAACCAGCTTACCCTTTATGTGGCTTCTTGGCGTCAAAATCATCTGCACAAGAAAGGGGGTCGAATCAAGATCATTGAAGCATGCCTCGTCTCTGTGTTAACTTCAGTTATTTCATTTGGTTTGCCGCTACTAAGAAAATGTAGTCCGTGCCCTGAATCTGATTCTATTATTGAATGTCCTCGACCACCTGGAATGTACGGGAATTATGTAAATTTCTTCTGTAGGAAAGACAAGGAATACAATGATCTTGCCACAATTTTCTTCAATACACAGGATGACGCCATAAGGAACTTGTTTAGTGCAAAAACAATACATGAGTACAGTCCCCAAAGTTTATTGACCTTTTTGGTAATGTTCTATGCTTTAGCGGTTGTAACATTTGGTACTGCAGTTCCAGCTGGTCAATTTGTTCCTGGAATTATGATAGGATCAACATATGGACGTCTCGTTGGCATGCTTGTTGTAAAATATTACAGAAAGCTCAACATTGAAGAGGGAACGTATGCTTTATTGGGAGCTGCATCTTTTCTTGGAGGTTCCATGCGAATGACAGTGTCTCTCTGTGTCATTATGGTTGAAATAACAAATAACTTACAACTTTTACCGCTTATTATGCTTGTTCTCCTCATATCCAAGGCTGTTGGTGATGCTTTTAATGAGGGCTTTTATGAAGAGCAGGCACGACTTAAGGGAATCCCATTGCTGGAATCAAGGCCTAAATATGAGATGCGGAATATGACAGCAAAGGAGGCCTGTGGGAGCAGAAGGGTGGTCTCTTTCCCTCGTGTTGTCAAAGTTGCAGATGCAGTTTCCATTCTTCGGAGCAATGAACACAATGGCTTTCCTGTCATTGATCACACAAGAAGTGGAGAATCACTTGTTATTGGATTAGTGCTTCGGAGTCATCTATTGGTAATTCTGCATTCGAAGGTTGATTTCCAGCATATTCCTATACCTGGTGATACCAGAGGCACGGCCAACCTGATAAGGCATCATTCTGATGAATTCACAAAGCCTATTTCTAGTAAAGGAATCTGTCTAAATGATATTCATCTAAGTTCAGATGACTTAGAAAAGTACATAGATCTGGCCCCATTTTTGAACCCCTCACCTTATATTGTACCTGAAGATATGTCTTTGTCTAAGGTCTACAATCTTTTCCGCCAACTAGGTTTGAGGCATTTATTTGTTGTTCCACGCCCATCTTGTGTGCTTGGTTTGATAACTAGAAAAGATCTGTTGATTGAGGACACAGAAAATGTGAATACAATACAGCTCCGGCCAACTAGTGTAATGTCTTTATGA 2316 0.4206 MLANHFQNGIETAKHVWSRIPNSEESQDQDDTLGLLKKSDGSGVESLDYEVIENYAYREEQALRGKLYMGYLLVVKWFFALLIGVGTGIAAVFINISVENFAGWKFSLTFHIIQKSYVVGFLVYVLINLVLVYSSVYIITQFAPAAAGSGIPEIKGYLNGVDIHGILLLRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSAKYHLNSRWFQVFKSDRDQRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKSGKCGHFGSGGFIIWDISGGQEDYSFSELLPMAVIGVIGGLLGALFNQLTLYVASWRQNHLHKKGGRIKIIEACLVSVLTSVISFGLPLLRKCSPCPESDSIIECPRPPGMYGNYVNFFCRKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSPQSLLTFLVMFYALAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMLVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLQLLPLIMLVLLISKAVGDAFNEGFYEEQARLKGIPLLESRPKYEMRNMTAKEACGSRRVVSFPRVVKVADAVSILRSNEHNGFPVIDHTRSGESLVIGLVLRSHLLVILHSKVDFQHIPIPGDTRGTANLIRHHSDEFTKPISSKGICLNDIHLSSDDLEKYIDLAPFLNPSPYIVPEDMSLSKVYNLFRQLGLRHLFVVPRPSCVLGLITRKDLLIEDTENVNTIQLRPTSVMSL 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0687 771 SUPERFAMILY Clc chloride channel 54 574 IPR014743 -
Prci9g0687 771 SMART cbs_1 593 645 IPR000644 -
Prci9g0687 771 SMART cbs_1 707 755 IPR000644 -
Prci9g0687 771 CDD ClC_6_like 45 572 - -
Prci9g0687 771 SUPERFAMILY CBS-domain pair 577 751 IPR046342 -
Prci9g0687 771 CDD CBS_pair_voltage-gated_CLC_euk_bac 591 751 - -
Prci9g0687 771 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 22 755 - -
Prci9g0687 771 Pfam CBS domain 592 644 IPR000644 -
Prci9g0687 771 Pfam CBS domain 705 751 IPR000644 -
Prci9g0687 771 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci9g0687 771 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci9g0687 771 PRINTS Plant CLC chloride channel signature 420 436 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci9g0687 771 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci9g0687 771 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Prci9g0687 771 PRINTS Chloride channel signature 503 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci9g0687 771 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci9g0687 771 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci9g0687 771 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci9g0687 771 PRINTS Chloride channel signature 468 488 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci9g0687 771 PRINTS Chloride channel signature 521 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci9g0687 771 PRINTS Chloride channel signature 559 573 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci9g0687 771 Pfam Voltage gated chloride channel 134 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci9g0687 771 ProSiteProfiles CBS domain profile. 704 761 IPR000644 -
Prci9g0687 771 Gene3D - 581 757 IPR046342 -
Prci9g0687 771 Gene3D Clc chloride channel 70 573 - -
Prci9g0687 771 FunFam Chloride channel protein 696 770 - -
Prci9g0687 771 FunFam Chloride channel ClC3 68 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0687 Prci-Chr9 21499205 21510848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0687 1 771 Ion Channels AT5G26240 81.242 0.0 1221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0687 K05016 - gmx:100811908 1327