Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0615 ATGACTTCGTCTTCTTCTACAATATCAACGAAAAACACGGGCAAAGGTAGGCGCAAGATCGAGATCAAGAAGGTCGAGCAAACCAGCAAGCGTCTTGTCACCTTCTCCAAACGCAAATTAGGCCTTTTCCGCAAAGCCGCGGAGCTATCCCTCCTCTGCAACGCTGAAATCGCCGTCGTCGTCTTTTCTCAGCACGGCAAGGTCTACTCCTCCGGCTACCCCGACCCTGACTCTGTCATCCACCGTTACCTCGCCGGCACATTCTCTTCCGGATTGGACTCCCCGTCGGTTGATCATGATCAGGATGGAGAATCGGCGGTTTCGTCGTCTTCGTCGCTGCTGAGGCGGGAATACGAGGAGGCGATGAAGGTGTTGGAGGATGAGAAGAAATCTCTGGACGCCACGGCTGAGATTCCCGGGTCGGGTTGTGGACAGGGGTCTTGGTGGAACCGCCCGGTTGGGGAGATGGGTTTGGAGGAAGTCGTTGAGTTCAAGGAAAGAGTTGAACAGTTAAGGCAGAATCTGGTTGTTGCGGCGGAGGAGGAGAAGAAGAAGCAGACGGCGATGACTTCGCCGATCAGTTTGCCGCCGCTGCCGCATATAACGGAATCGACGATGGAAACGGAGGAGTCTTTGTACCATTCTCTGTTGAATGACGACGTGTTCGACATGGATCGAGTGTGGGATTGGGATTTCTGGAATAAGACTACAAACAGTAATAATTCTTCCATGGTTTGGAATAGCGATCTTAGCCAGTCTTATTAA 765 0.5229 MTSSSSTISTKNTGKGRRKIEIKKVEQTSKRLVTFSKRKLGLFRKAAELSLLCNAEIAVVVFSQHGKVYSSGYPDPDSVIHRYLAGTFSSGLDSPSVDHDQDGESAVSSSSSLLRREYEEAMKVLEDEKKSLDATAEIPGSGCGQGSWWNRPVGEMGLEEVVEFKERVEQLRQNLVVAAEEEKKKQTAMTSPISLPPLPHITESTMETEESLYHSLLNDDVFDMDRVWDWDFWNKTTNSNNSSMVWNSDLSQSY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0615 254 PANTHER MADS BOX PROTEIN 17 175 - -
Prci9g0615 254 Coils Coil 115 135 - -
Prci9g0615 254 MobiDBLite consensus disorder prediction 93 113 - -
Prci9g0615 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 70 IPR002100 GO:0003677|GO:0046983
Prci9g0615 254 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Prci9g0615 254 Coils Coil 161 185 - -
Prci9g0615 254 CDD MADS_MEF2_like 16 84 IPR033896 GO:0000977|GO:0045944
Prci9g0615 254 Gene3D - 28 92 IPR036879 GO:0003677|GO:0046983
Prci9g0615 254 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Prci9g0615 254 SUPERFAMILY SRF-like 16 85 IPR036879 GO:0003677|GO:0046983
Prci9g0615 254 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Prci9g0615 254 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Prci9g0615 254 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0615 Prci-Chr9 20869680 20870706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0615 15 179 Type I MADS-box Gene Family AT5G60440 38.462 4.31e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci9g0615 SRF-TF 1.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0615 - - pcin:129319416 494.582