Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0538 ATGGTAGGATTGGAACTCATACCAGTAGGCACAATTCTGGCTGTGCTTACCAATCAGATTTTGAAAACAGCTAACGCAGCATCTGAAGTTCTTATTGAAAAAGAAATTTTTAAGGTTCTTTCACAACACTTGTACGATATTGAACCGGTGCTAAAGGAATTACAGCTTCAAGAATTGAATGAGTCTCAAGCTGCAAGAATTGCTCTGGAGTCTCTGGAAGAAGATGTGAAGAGGGCAAATAAAGTGGTTGAGAAGTACAGGAACCGGGGTCGTTTTTACTTGCTGTTTAAGTGCAGGCACATAGTTGATGAAGTTGAAGAGGTCACAAGAAGCATTGGAAAGTCCTTGTCTGTGCTATCACTTGCAAATACTGAAGTCTTATCGCGAATTTCTGATCAGGTTGATAGATTGCAAAATGAAATGCAAAGGGTAGAGTTCGAGGCATCACAATCTCAGATTCAAATAGTGGAGAGGTTGGACCAGGGCCTTAGGGAGCAGAAACAAGACCAGGCTTTTGCAAATGACATGCTTGAAGAAATTGCAAGGGCGGTTGGCGTGCCAGTCGAGCCCTCAGAGATAAGCAAAGAGTTGGCCAGCATTAGGAAAGAAAAAGAAGAAGCTGCGGACAGGAAAGAAAGAGCTGAGGTCTTCTTCTTGGAGCAGGTCATTGAGTTACTGTCCCGAGCTGATGCTGCAAGAGATTATGAAGAAGTTAAGAAACAATACTATGAAAGACTTCAGGTGATAGAGAGGTACAATTCAAGGGAAAAATATATAGAGCCGCTTAATTCTTTCCTTTGTTGTATAACTGGGACTGTTATGGTAGATCCAGTAAGCCTTTGTACGGGTACCACTTGTGAGAGATATGCCATTGAGTCTTGGTTTGACAGTGGCATGAGGACTGACCCAGAAACTAAAGAAATCCTTGAAGATACTAAGTTGAGATCTAATGTTCCTCTTAGACAATCCATAGAGGAATGGAGAGAACTTAATTACTGCCTTACAATTAGGTCCATCAGAGAAAACCTTTTATCAAGTGGTAACTTATCTGTGGAAGAATCCTTGAACCAAGTGCAGGATCTCATAAGAGAGAATTCTATAAACAAGGACTGGATTTCTATAGGAGGGCTCACAGACATGATCATCTCCATCCTTGGGAGCACTGATAATGGAGATGTAAAGATCAATATTTTGAATACTTTGAATTATGCAGTAGAAGGGCATATGAGAAACAAGGAAAAAGTATCAGAGTCTCAAGGATGGGATCACATTATTTGCTGTTTGGGAAGCGACTCAAGAATTTCAAAAGCTGCCATTGATTTGCTGCATGAGTTAATGGAAGGTCGAGCTGGTTGGAATGTGTCTTTCTGTAGAAAACTCTCTCAGCATCACAGTGCAATTTCATTCCTTGTTAACCTTCGGAAGGGTCCAGACGAGGAGTCAGCTGAGATTGCAGAAAAGATTCTGATGGAGCTTTTCGACATAGATGAGGCCAACATTTCTAGTGCTGCCAAGTTTGGCTGGTATAAACCGCTTGTTGATCGTATGGTTCAAGGCGTAGAATCTTCAAGAATATCAATGGCTAAAACCATTGTCAATATGGAGCTGAGCAATTTAAATTTGAACCTCCTTGGTGAAGGAGTTATACCTCCTTTGCTCGAAATGCTGTCTGGCAATATTGAATTAAAAGAAGTCTCATTATCTGCACTGGTTAAACTATCAGGTTCTCGTGCCAATAAAAGTATTATAGCTTCACTGGGAGGAGTTCCTATTATTCTAGAACAGATGTTCTCTCCTTCTATGCGAACTCTCATTACCATAAAATGCTCTGAAATCCTGGAGAAGCTTTCTGCTGATGATGATGGAATTGATTACTTTGTTGATAAAGAAGGGAAACAACTTGAGCTAGATTCCATTATCACCAAATTACTTGCCCTTCAGCAGAGTCCCAACTTAGCCCACAATATCCGCAAGCCTTCTTTACGTGCACTTCTTGGAATTTGCAAGTTTGAGACTGGTTTAGTCAAGAAAGCTGTCCTAGCTGCCAGTGGTGTGTCTCTAATCCTTCCCCTTCTTGATGACTCTGATTCAGAAATCAGACAGACTGCCATAAACCTTCTCTTTCTTTTCTCTCAACATGAGCCAGAAGGAGTGGTTGAATACCTCTTCAGGCCAAGGAGGCTGGAGGCTTTGGTGGGATTTCTAGAGACTGATGATAATGAAGTACAGATGGCTGCTGCTGGTTTACTAGCAAACCTACCGAAATCCGAAAAAGAGCTCACTATGAAGCTGATTGAATTGGGTGGCCTTGATGCAATCATATGCATTTTGAAAACTGGAATAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGATCCTACAAACATCGAGTCACAACGCGATTTGGTTAAACGTGGAATATATCCTCTGCTTGTGAATTTTCTCTCCACTGGTTCAATAACAGCTAAGGCTAGAGCTGCAGCCTTCATTGGAGATCTTTCTTTGAGCACTCCAATGCTCACAGTTTCTGCCGAATCAACAGGCTGCTGGTGTTTTAGATCATCAAGAGTTCCTTTGTGCCCAGCACATAGTAGTGTATGCAGTGTGAGCAACACATTTTGTCTCTTGGAAGCAAAAGCTTTACCTGGTTTGGTGAATCTCTTATGTGGGGAGGTTGATGTAACTGCTTATGAAGCAATACAGACACTTTCAACATTGGTTTTAGAAGATTATCCTCAAAGGGGAGCACGTGTTTTGCACGAATGGAACGCTATAAAACCGCTTCTAGATATTCTGACATGGGGGTCTGATTCTCTGAAGGCTGAGGCTCTAGGACTCTTAGAGAAGGTCTTTGTATCAAAGGAAATGGTGGAATCCTACGGCGTAACAGCTAGATCACGTCTGGTTGGTTTGACGGGGATGAATATTTATGGAGATGGCCATCTCAGAAGAAAAGCTGCTAAGGTATTGTCATTGATTGAACGGTATTCAAGGTCATCATCTGCTGCTGTTTCAGGAGTTCTAGAGTGA 3045 0.4174 MVGLELIPVGTILAVLTNQILKTANAASEVLIEKEIFKVLSQHLYDIEPVLKELQLQELNESQAARIALESLEEDVKRANKVVEKYRNRGRFYLLFKCRHIVDEVEEVTRSIGKSLSVLSLANTEVLSRISDQVDRLQNEMQRVEFEASQSQIQIVERLDQGLREQKQDQAFANDMLEEIARAVGVPVEPSEISKELASIRKEKEEAADRKERAEVFFLEQVIELLSRADAARDYEEVKKQYYERLQVIERYNSREKYIEPLNSFLCCITGTVMVDPVSLCTGTTCERYAIESWFDSGMRTDPETKEILEDTKLRSNVPLRQSIEEWRELNYCLTIRSIRENLLSSGNLSVEESLNQVQDLIRENSINKDWISIGGLTDMIISILGSTDNGDVKINILNTLNYAVEGHMRNKEKVSESQGWDHIICCLGSDSRISKAAIDLLHELMEGRAGWNVSFCRKLSQHHSAISFLVNLRKGPDEESAEIAEKILMELFDIDEANISSAAKFGWYKPLVDRMVQGVESSRISMAKTIVNMELSNLNLNLLGEGVIPPLLEMLSGNIELKEVSLSALVKLSGSRANKSIIASLGGVPIILEQMFSPSMRTLITIKCSEILEKLSADDDGIDYFVDKEGKQLELDSIITKLLALQQSPNLAHNIRKPSLRALLGICKFETGLVKKAVLAASGVSLILPLLDDSDSEIRQTAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLETDDNEVQMAAAGLLANLPKSEKELTMKLIELGGLDAIICILKTGIMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLSTGSITAKARAAAFIGDLSLSTPMLTVSAESTGCWCFRSSRVPLCPAHSSVCSVSNTFCLLEAKALPGLVNLLCGEVDVTAYEAIQTLSTLVLEDYPQRGARVLHEWNAIKPLLDILTWGSDSLKAEALGLLEKVFVSKEMVESYGVTARSRLVGLTGMNIYGDGHLRRKAAKVLSLIERYSRSSSAAVSGVLE 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0538 1014 SUPERFAMILY RING/U-box 248 330 - -
Prci9g0538 1014 Coils Coil 127 154 - -
Prci9g0538 1014 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 588 IPR000225 GO:0005515
Prci9g0538 1014 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 726 753 IPR000225 GO:0005515
Prci9g0538 1014 CDD MLKL_NTD 10 145 - -
Prci9g0538 1014 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1006 - -
Prci9g0538 1014 SUPERFAMILY ARM repeat 546 956 IPR016024 -
Prci9g0538 1014 Coils Coil 62 89 - -
Prci9g0538 1014 Gene3D - 858 1007 IPR011989 -
Prci9g0538 1014 SMART arm_5 915 957 IPR000225 GO:0005515
Prci9g0538 1014 SMART arm_5 714 755 IPR000225 GO:0005515
Prci9g0538 1014 SMART arm_5 408 447 IPR000225 GO:0005515
Prci9g0538 1014 SMART arm_5 873 913 IPR000225 GO:0005515
Prci9g0538 1014 SMART arm_5 537 575 IPR000225 GO:0005515
Prci9g0538 1014 SMART arm_5 757 797 IPR000225 GO:0005515
Prci9g0538 1014 SMART arm_5 672 712 IPR000225 GO:0005515
Prci9g0538 1014 SMART arm_5 800 840 IPR000225 GO:0005515
Prci9g0538 1014 SMART arm_5 576 618 IPR000225 GO:0005515
Prci9g0538 1014 Gene3D - 538 854 IPR011989 -
Prci9g0538 1014 SUPERFAMILY ARM repeat 196 623 IPR016024 -
Prci9g0538 1014 Gene3D - 336 537 IPR011989 -
Prci9g0538 1014 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Prci9g0538 1014 Gene3D - 8 123 IPR036537 GO:0007166
Prci9g0538 1014 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Prci9g0538 1014 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Prci9g0538 1014 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 335 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0538 Prci-Chr9 18683291 18688165 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0538 264 1000 U-box Gene Family AT1G76390 28.010 2.83e-43 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0538 - - gmx:100783638 1501.49