Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0524 ATGAATTGCGAAGGCCCAGTGAATCGCAGAAGATCCTGCAAGAAACCAAAATTGATGGAGGAAATGGCAATCCCTTCGATTGAGGCAGTAGTGGACGTTGAAGATTTCAATCATTCACCCATCTGGAATGAGGGCACAAGCAAATCCAATGCAATCTGCGTCGAGCAATACACCCACGACCTCCACGTGGACCTGGACCTCGCGATCATGGCTTCTCTAGGCACACCAACGCCTGCCACGAAAATCTTCATCGACCTTTCCGATGGTGATGACGATGACGAGGTTAGAATTCTCAGGTTTAAACCTAAGAGCACCCCTTTCAGGGAACGAAGGAGGTCAACGGCTCCTGCTGTTTTCACTGTCGAAACAGGGGAATCTTCCAATTCTGTTCAATTTGTTTGCGAAATCTGTACTGAAAGCGTGACTGGAAACGAGTCGTTTAACATCAGTGGCTGCTCTCACGCTTATTGCAGAGGCTGTGTGATTAGGTATGTGGAATCTAAGCTACAAGAAAATATTGTGAACATTAGATGTCCAGTGACAGGGTGTGTTGGATTGTTGGAGCCCGAGGATTGCCGCGGGATTCTTCCTCCGGAAGTGTACAATATGTGGGGCAATGCCTTGTGTGAGGCTGTCATACTCGCGGAAGAGAAGTTTTACTGCCCATATAAGGACTGTTCTGCGCTACTGATTGATGATGGAGGAGAAAGGACCATCACAGAGTCGGAGTGTCCCAACTGTAGGAGACTCTTTTGTGCGCAGTGTAAGGTGCCGTGGCATTCAGGAATTGATTGCGCTGGGTTTCAGGAACTGAGCAAGGACGAGAGAGAGAAGGAAGATATTATGCTGATGCAACTCGCTCGGAACCGTAAGTGGAGGAGGTGTCCCAAATGTAGGTTCTTCGTCGAAAAGTCTAATGGTTGTATGTATATGAAATGCAGGTGTGGAATTGCCTTCTGTTATAATTGTGGTACTCTTTCAAGAGATCATTCCCATCATTGCTATAATTGTAGACGCTGA 1020 0.4706 MNCEGPVNRRRSCKKPKLMEEMAIPSIEAVVDVEDFNHSPIWNEGTSKSNAICVEQYTHDLHVDLDLAIMASLGTPTPATKIFIDLSDGDDDDEVRILRFKPKSTPFRERRRSTAPAVFTVETGESSNSVQFVCEICTESVTGNESFNISGCSHAYCRGCVIRYVESKLQENIVNIRCPVTGCVGLLEPEDCRGILPPEVYNMWGNALCEAVILAEEKFYCPYKDCSALLIDDGGERTITESECPNCRRLFCAQCKVPWHSGIDCAGFQELSKDEREKEDIMLMQLARNRKWRRCPKCRFFVEKSNGCMYMKCRCGIAFCYNCGTLSRDHSHHCYNCRR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0524 339 CDD BRcat_RBR_unk 217 268 - -
Prci9g0524 339 FunFam RBR-type E3 ubiquitin transferase 267 339 - -
Prci9g0524 339 SMART ring_2 134 181 IPR001841 -
Prci9g0524 339 CDD Rcat_RBR_unk 291 325 - -
Prci9g0524 339 ProSitePatterns Zinc finger RING-type signature. 152 161 IPR017907 -
Prci9g0524 339 Pfam Zinc finger, C3HC4 type (RING finger) 134 179 IPR018957 GO:0046872
Prci9g0524 339 SMART ibrneu5 275 337 IPR002867 GO:0008270
Prci9g0524 339 SMART ibrneu5 202 265 IPR002867 GO:0008270
Prci9g0524 339 Gene3D - 219 266 - -
Prci9g0524 339 ProSiteProfiles Zinc finger RING-type profile. 134 180 IPR001841 -
Prci9g0524 339 SUPERFAMILY RING/U-box 131 211 - -
Prci9g0524 339 ProSiteProfiles TRIAD supradomain profile. 130 339 IPR044066 -
Prci9g0524 339 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 80 332 IPR031127 GO:0004842|GO:0016567
Prci9g0524 339 SUPERFAMILY RING/U-box 208 270 - -
Prci9g0524 339 Gene3D - 267 339 - -
Prci9g0524 339 SUPERFAMILY RING/U-box 276 338 - -
Prci9g0524 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 215 IPR013083 -
Prci9g0524 339 FunFam RBR-type E3 ubiquitin transferase 129 215 - -
Prci9g0524 339 Pfam IBR domain, a half RING-finger domain 285 330 IPR002867 GO:0008270
Prci9g0524 339 Pfam IBR domain, a half RING-finger domain 213 265 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0524 Prci-Chr9 18650406 18652560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0524 134 325 C3H Transcription Factor Family AT2G19610 29.353 3.32e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0524 K11975 - qsa:O6P43_021976 425.246