Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0453 ATGATGGAGGCAGATCCTTCGTGCGAGTCGATCAAGAAGGTACAGTCACGATTCGATTTCGAGGTTCCCGAACTGGCCGTTCGCTTAGCTCTGAAGGAGTCTCAGTTCAACCTGGATGCTGCAGTGGAGTTTCTCAACAACAATCCCGGGTTTCTGGCCCGGCCCGTCACGGTGGTTCGGGCTGTTGCTAGCACTGGCTCGAGGGTTTTGGCACCGACTCCGATAAAGCAAGAGGGCTTCGATGATTCGCGTGTGTCCGATGAAATGTGTCTGAACAGCAAGGTGAAAGAGGAACCCGTTTATCCGGCGCTTGAGAATCAAAACCCGGCGAAAGCAGAAAATGGTTCCGATGATTCTCATGAAGTGGCGCAACCGGTCGACGAGTTGAATGTGGAGAAGAAAGTGAAGGAAGAAGTCAATGTCGACCCCGAGAAGCAGGTTTCAAAGAGAGAAGAAATGGATTCTGGTGGTTCTGGTTCATTGCTGTCCCAAACCCAGACGCAAGGGTCTACCGGTATTTCGAAGTCTTCATGGGAAGCTGGATACGAAGAGTTTCTCAAGGCCACAAACGCAAAAGTTATGTCAAAGGAAGAATATATAAACTCCGTTGCGGAACAGCAGCCATCAGTCCAGGCTGAAGGTCCGAAATTGACACAAGATTTGGCTTCTGCAAATAAGGCCTCTGATAAGAAAGAAGTTGCTACCCCTGATCGCGATGAAGTAAAAATCCTCAAAGAAGTTAGTTCCTTTCCAATTTTTCGGAAGTCTTCGCAGGTTAAAAAGGAAAAGGTTGAACCTAGACCTCCAAATGTGGAGGATGGGGACTTTCCAGTTGATCGAGACTGGTTTTTAGCGGGTAGGACAATTATTACTGTACTTTCAACTACCAAAGGGAGGAAATTAGTGGACAATGAGATTGTATATTTTGATTTCCGATCTGCATTTGCGAAACACAACTCGAAATGGATTCTTCGCATTTCAACCAAGCGTTCCGGAGAGGTTGGACGGGTTCCTATGGAATGGGCTAAAGAGGTTGTTCCACTCGTTCGTTCTGGAAAGGTGAAGGTTAAAGGCCGATGCGTGGCTGCACCGCCTTTCTTACAAATGATGCAAGAAGTCATGTTGTGTGTAAGCTTTTACATCCACCACAGCGCATTCACGTCAGAAGTCAACACTTCATGGAAGCTTGATGGCCCTGCTTACATTGACCCTTCTGTCTATCCTCTCATCTCAGTGTTTAGATTGATAGAAATGAAGCCATATCAGAATGCTGCTTTTACTCCAGAGGAACTTGATTCTAGAAAGCGTTTGTTCAGTCTCAGGGGTAATCCTGATGAAGCTGCATCAAATATGCCTGTCTTGAAACGGAGAAAGGGTGGTTCTCCAGATCAAGATGATGAACAAGCTGTGTCACAATCATCTTTGAGTATGCTTGTTGGAGCAGCTGAAGTCTACGACTTGGAGGAGATGGAGGGGCCAAGCACACTGATGTGTGATCTAAAGCCTTACCAGAAGCAAGCTCTGTATTGGATGTCGGAACTAGAGAAAGGAACTAATGCTCAGAATGCTGAAAGTACTCTTCATCCTTGCTGGGCAGCCTATTGTATAAATGATGAGAGGGTTCCCTCTATTTACGTAAACAACTTCACAGGGGAAGCAACAAGTAAGCTGCCGCCTGCATTTCGATTGCCAAGAGGAGGAATTCTCGCAGATGCAATGGGACTGGGGAAGACTGTCATGACTATTGCTCTAATTCTTGCAAGACAAGGGAGAGGAGATAATATTGGTCTTTTAAGGAACAGGAACCAAGATTCTCATGCTGACGCCACATTAGTTGATGGCGGCACTCTTGTTGTTTGTCCCATGGCATTGCTAGGTCAATGGAAGGACGAGATTGAAACCCATTCCAAGCCAGGAAGTATATCCATTTTTGTTCACTATGGTGGGGACAGGACCAATGATCCTCGGGTGATCTCAGGGCGTGATGTTGTTTTAACAACATATCGTGTCCTCGCAGATGCATATAAATCCTATGGAGAGAACAGCATTTACCATAGGGTCAACTGGCAAAGGGTGGTCCTAGATGAAGCCCATTCCATTAAAGCCTATAAATCTCATGCTGCAAAAGCTGCTTTTACACTGACCTCACGCTGCCGTTGGTGTCTTACTGGAACCCCTTTACAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGCTTCTTGCAAGTTGAACCATGGGGCAATTATGCATGGTTTAATAAATTGGTTCAACGGCCTTATGAGAATGGTGATCCTCGAGGCTTGAAATTAGTCAAGGCCATTTTGAAGCCATTGATGTTGAGAAGAACAAAAGAAACAAAGGATAAGTGCGGAAGGCCCATACTTGTTCTTCCACCAACTGACATTCAATTAGTTGAGTGTGAACAGACAGCAGCTGAGGCTGAATTTTATAATGCTCTCTTCAGGAAATCTAAAGTTCAATTCGACGAGTATGTTGGACAAGGAATTTTCAGCAACTATGCCAACATTCTAGAGTTATTATTGCGGTTGAGACAATGTTGTAATCACCCGTTTCTGATCACAAGCCGAAATAATTCAAGGAAGCCTGTGGACTTTGACATACTAGCAAAAAGACTACTCGAGTTCAACTCCAATTCTACGAGTCAGCGTGCATATGTTAACGAGGCCATGGAGGCTCTTCGCAAGGGTGAAAAACTAGAATGCCCAATATGCTTAGAATCTGCAGATGATCCTGTGTTCACTCCATGTGCACACAGAATGTGTAGGGAATGCTTACTTTCCAGCTGGAGTACCCAAATCAGTGGTCCCTGCCCTCTCTGTCGTCAGAAGCTAGACAAAACTGACCTAATTAATTGTCCATTTGAGAATCAGTTCGTGGTTGCTGATGTTGAGAAGGACTGGAAAGAGTCTACCAAGGTTTCAAAGCTTTTGGAATACTTGGAACACATTCAGAGATATCGCCCTGCGGAAAAAAGCATTGTGTTCAGCCAATGGACCTCTTTTTTGGACCTCTTGGAGATTGCTTTGAGGAAGAAAGGAATTGGGTATTTTAGATTTGATGGGAAGCTGCAACAAAAGAATAGGGAAAGAGTTTTGAAGGAGTTCAATGAGTCAAGTGAGAGAAGGGTTTTGTTGATGTCACTTAAAGCTGGTGGTGTAGGTTTGAACTTGACTGCAGCCTCAAATGTCTTCATGATGGATCCATGGTGGAATCCTGCGGTTGAGGAACAAGCTATTATGAGAATCCATCGTATAGGACAAAAGCGAACAGTTGTGGTTAGAAGATTCATTGTCAGGGATACTGTGGAAGAGAGGCTTCAACAAGTTCAGGCGAAGAAGCAGAAGATGATATCTGGAGCCCTCACAGATGATGAAGTTCGATCAGGAAGGATTGAAGATCTCATGATGCTGTTCAGTTGA 3441 0.4487 MMEADPSCESIKKVQSRFDFEVPELAVRLALKESQFNLDAAVEFLNNNPGFLARPVTVVRAVASTGSRVLAPTPIKQEGFDDSRVSDEMCLNSKVKEEPVYPALENQNPAKAENGSDDSHEVAQPVDELNVEKKVKEEVNVDPEKQVSKREEMDSGGSGSLLSQTQTQGSTGISKSSWEAGYEEFLKATNAKVMSKEEYINSVAEQQPSVQAEGPKLTQDLASANKASDKKEVATPDRDEVKILKEVSSFPIFRKSSQVKKEKVEPRPPNVEDGDFPVDRDWFLAGRTIITVLSTTKGRKLVDNEIVYFDFRSAFAKHNSKWILRISTKRSGEVGRVPMEWAKEVVPLVRSGKVKVKGRCVAAPPFLQMMQEVMLCVSFYIHHSAFTSEVNTSWKLDGPAYIDPSVYPLISVFRLIEMKPYQNAAFTPEELDSRKRLFSLRGNPDEAASNMPVLKRRKGGSPDQDDEQAVSQSSLSMLVGAAEVYDLEEMEGPSTLMCDLKPYQKQALYWMSELEKGTNAQNAESTLHPCWAAYCINDERVPSIYVNNFTGEATSKLPPAFRLPRGGILADAMGLGKTVMTIALILARQGRGDNIGLLRNRNQDSHADATLVDGGTLVVCPMALLGQWKDEIETHSKPGSISIFVHYGGDRTNDPRVISGRDVVLTTYRVLADAYKSYGENSIYHRVNWQRVVLDEAHSIKAYKSHAAKAAFTLTSRCRWCLTGTPLQNSLEDLFSLLCFLQVEPWGNYAWFNKLVQRPYENGDPRGLKLVKAILKPLMLRRTKETKDKCGRPILVLPPTDIQLVECEQTAAEAEFYNALFRKSKVQFDEYVGQGKXFSNYANILELLLRLRQCCNHPFLITSRNNSRKPVDFDILAKRLLEFNSNSTSQRAYVNEAMEALRKGEKLECPICLESADDPVFTPCAHRMCRECLLSSWSTQISGPCPLCRQKLDKTDLINCPFENQFVVADVEKDWKESTKVSKLLEYLEHIQRYRPAEKSIVFSQWTSFLDLLEIALRKKGIGYFRFDGKLQQKNRERVLKEFNESSERRVLLMSLKAGGVGLNLTAASNVFMMDPWWNPAVEEQAIMRIHRIGQKRTVVVRRFIVRDTVEERLQQVQAKKQKMISGALTDDEVRSGRIEDLMMLFS 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0453 1147 CDD RING-HC 907 948 - -
Prci9g0453 1147 Pfam HIRAN domain 290 375 IPR014905 GO:0003676|GO:0008270|GO:0016818
Prci9g0453 1147 ProSitePatterns Zinc finger RING-type signature. 924 933 IPR017907 -
Prci9g0453 1147 SMART helicmild6 1011 1094 IPR001650 -
Prci9g0453 1147 MobiDBLite consensus disorder prediction 96 175 - -
Prci9g0453 1147 Pfam SNF2-related domain 503 860 IPR000330 GO:0005524|GO:0140658
Prci9g0453 1147 MobiDBLite consensus disorder prediction 442 472 - -
Prci9g0453 1147 CDD SF2_C_SNF 978 1105 - -
Prci9g0453 1147 SMART ultradead3 496 757 IPR014001 -
Prci9g0453 1147 Pfam Helicase conserved C-terminal domain 982 1094 IPR001650 -
Prci9g0453 1147 Pfam Zinc finger, C3HC4 type (RING finger) 909 948 IPR018957 GO:0046872
Prci9g0453 1147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 902 958 IPR013083 -
Prci9g0453 1147 CDD DEXDc_SHPRH-like 500 782 - -
Prci9g0453 1147 SMART HIRAN_2 283 381 IPR014905 GO:0003676|GO:0008270|GO:0016818
Prci9g0453 1147 MobiDBLite consensus disorder prediction 205 235 - -
Prci9g0453 1147 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 558 744 IPR014001 -
Prci9g0453 1147 SMART ring_2 909 948 IPR001841 -
Prci9g0453 1147 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 275 1146 - -
Prci9g0453 1147 MobiDBLite consensus disorder prediction 157 175 - -
Prci9g0453 1147 Gene3D - 554 783 IPR038718 -
Prci9g0453 1147 Gene3D - 798 1146 IPR027417 -
Prci9g0453 1147 ProSiteProfiles Zinc finger RING-type profile. 909 949 IPR001841 -
Prci9g0453 1147 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 983 1143 IPR001650 -
Prci9g0453 1147 MobiDBLite consensus disorder prediction 205 224 - -
Prci9g0453 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 795 1139 IPR027417 -
Prci9g0453 1147 SUPERFAMILY RING/U-box 904 958 - -
Prci9g0453 1147 MobiDBLite consensus disorder prediction 114 152 - -
Prci9g0453 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 782 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0453 Prci-Chr9 17110693 17117148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0453 254 1146 RAD5 or RAD16-like Gene Family AT5G43530 63.886 0.0 1217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci9g0453 SNF2_N 2.3e-80 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0453 K15505 - cave:132178751 1286.55