Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0291 ATGGACAAGTGTCCTTTGCCATTAAAGAACATAGAAAGTAAAACCCATGAGAATAAGAAGAGGGTTTTATCTGGGAAGGAAGCATTGGTGAAGCTTTTAAGATGGCATTTTGGTTACCCTGATTTTAGGGGCAAGCAATTGGAGGCTATTCAAGCTGTACTTTCAGGAAGAGATTGTTTTTGTCTTATGCCAACAGGAGGAGGGAAGTCATTATGTTATCAGATCCCTGCATTGGCTAAAACAGGAATAGTTCTAGTTGTTTGTCCATTAATAGCTTTGATGGAAAACCAAGTGATGTCATTAAAGGAGAAAGGAATTGCTGCGGAATTTCTCTCCTCAACCCAAACAGCTGATGTAAAAAATAAGATTTATGAGGACCTTGATTCTGCAAAGCCTTCTATAAGGCTGCTGTATGTCACCCCGGAATTGATAGCAACACAGGGTTTTATGTCAAAGCTGAAAAAAATATATGCTAAAGGGTTGTTGAATCTCATTGCCATAGATGAGGCACATTGCATCTCAACTTGGGGCCACGATTTCAGACCTAGCTACCGTAAGCTTTCATCGTTGAGAGACCACCTTGTGGATGTACCAATGTTAGCTCTGACTGCTACGGCTGCTCCTAAGGTGCAGAGGGATGTGGTAAAATCATTGAACATGCAAAATCCATTAATACTAAAGTCATCTTTTAATCGTCCTAATATATACTATGAAGTACGATACAAAGATCTGTTGGAAGATGCTTATACTGATATGTCCAATATGCTAAAATCTAAAGGAGATGTCTGTGCAATTGTTTACTGCCTTGAGCGTTCAACATGCAATGACCTGGCAGCTCATCTATCCCAAAATGGCATTTCCTGTGCTGCCTATCATGCAGGGTTGAATAATAAGTTGCGGACGTCTGTGTTGGATAATTGGATTTCATCCAAGATACAAGTTGTTGTTGCCACTGTTGCTTTTGGGTTAGGCATTGATAGAAAGGATGTCAGAATTGTATGCCACTTTAATATTCCAAAGTCAATGGAAGCATTCTATCAGGAGTCAGGCAGAGCAGGTCGTGATCAGTTGCCCTCTACGAGTTTGATGTACTATGGAGTAGATGATCGCAAACGAATGGAATTTATACTGAGCAAATCTGGAAGCAACAAGTCACAGTCATCAAGCTCTCAAGAAGAATCATCCAAAAGGTCCCTAGCTGACTTTAGTCAGATGGTTGAATACTGTGAAGGATCTGGATGCCGAAGGAAAAAGATTCTTGAGAGTTTTGGGGAGCAGGTGACGGCATCACTATGTGGAAAATCATGTGATGCTTGCAGACATCCGAACTTAATTGCTAGATGTTTGGAGGACTTAACAACTGCCCGATCATTACACCAGAAGCATAGTTCCTCTCGAGTCTTCATCACCAGTTCGACGAGTGGGGTTGATGAAGAACAAGTATCTGAATTCTGGAATCGTGATGAAGAAGCAAGTAGATCAGATGAGGATATATCTGATTCAGATGATGGTGCTGAGATTGTCAACAACCTAACCAAATCAAAGTGTAAATCAAGATTGGGAGTGAATGAAAAAATTGCATTGTTGCAACGTGCTGAAGAAAATTTCTATGGAAATGAAAATGCTGAGAAACAGAGAAACAAAGTTGACAAGAATGCTATATCTGACACAATGAGAGGAGCAAGCAGGGAAAAACTGCAAAATTCTCTAAAGCAGGCCCAGCAACGGCTTCACAACTTGAAGATTGAGGTGGAAACCTCAGCATCTTTGCTTGAGGATGAATGCTATAAGAAATATGGGAAGGTTGGCAAATCATTCTATTATTCACAGGTGGCAAGTACTGTTAGGTGGCTGTCAACTACAAATTCAACTGATCTGGTAAGTCGCCTTAGAGGAGTCGATGCTTCCTCATCAATGATCGTGTCGTCCGAGGAGGAACATCCTGTTAAGACACCACCTTTGTCAGACCCTTCTGTGAAAGAAGGGACTGACAATGAACCTGATGCCATTCCTGAGTCAGAAACCTCCCCATGCGCTTTACCAATTGAAAGTTCATCCTTGAAGACAAACTTGCCTCCAATTCCATCCTTTTCCGAGTTTGTTAACAGTGAGAAGGTAAAAGGTAGCCCAACAAGAACCACACAACAGCTCTCTCCAAGAGTAGAGAAGAGGATGAGACTATCGTAA 2187 0.4134 MDKCPLPLKNIESKTHENKKRVLSGKEALVKLLRWHFGYPDFRGKQLEAIQAVLSGRDCFCLMPTGGGKSLCYQIPALAKTGIVLVVCPLIALMENQVMSLKEKGIAAEFLSSTQTADVKNKIYEDLDSAKPSIRLLYVTPELIATQGFMSKLKKIYAKGLLNLIAIDEAHCISTWGHDFRPSYRKLSSLRDHLVDVPMLALTATAAPKVQRDVVKSLNMQNPLILKSSFNRPNIYYEVRYKDLLEDAYTDMSNMLKSKGDVCAIVYCLERSTCNDLAAHLSQNGISCAAYHAGLNNKLRTSVLDNWISSKIQVVVATVAFGLGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLMYYGVDDRKRMEFILSKSGSNKSQSSSSQEESSKRSLADFSQMVEYCEGSGCRRKKILESFGEQVTASLCGKSCDACRHPNLIARCLEDLTTARSLHQKHSSSRVFITSSTSGVDEEQVSEFWNRDEEASRSDEDISDSDDGAEIVNNLTKSKCKSRLGVNEKIALLQRAEENFYGNENAEKQRNKVDKNAISDTMRGASREKLQNSLKQAQQRLHNLKIEVETSASLLEDECYKKYGKVGKSFYYSQVASTVRWLSTTNSTDLVSRLRGVDASSSMIVSSEEEHPVKTPPLSDPSVKEGTDNEPDAIPESETSPCALPIESSSLKTNLPPIPSFSEFVNSEKVKGSPTRTTQQLSPRVEKRMRLS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0291 728 Coils Coil 563 590 - -
Prci9g0291 728 SMART helicmild6 275 356 IPR001650 -
Prci9g0291 728 CDD SF2_C_RecQ 232 365 - -
Prci9g0291 728 FunFam ATP-dependent DNA helicase 23 231 - -
Prci9g0291 728 Pfam Helicase conserved C-terminal domain 254 354 IPR001650 -
Prci9g0291 728 MobiDBLite consensus disorder prediction 378 398 - -
Prci9g0291 728 Pfam DEAD/DEAH box helicase 46 211 IPR011545 GO:0003676|GO:0005524
Prci9g0291 728 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 244 396 IPR001650 -
Prci9g0291 728 SMART ultradead3 38 240 IPR014001 -
Prci9g0291 728 CDD DEXHc_RecQ 31 231 - -
Prci9g0291 728 MobiDBLite consensus disorder prediction 678 721 - -
Prci9g0291 728 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 224 IPR014001 -
Prci9g0291 728 PANTHER DNA HELICASE RECQ FAMILY MEMBER 24 564 - -
Prci9g0291 728 FunFam RecQ family DNA helicase 232 457 - -
Prci9g0291 728 NCBIfam RecQ family ATP-dependent DNA helicase 32 444 IPR004589 GO:0004386|GO:0006310
Prci9g0291 728 Gene3D - 7 231 IPR027417 -
Prci9g0291 728 MobiDBLite consensus disorder prediction 638 728 - -
Prci9g0291 728 Gene3D - 232 458 IPR027417 -
Prci9g0291 728 MobiDBLite consensus disorder prediction 479 504 - -
Prci9g0291 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 376 IPR027417 -
Prci9g0291 728 Pfam RecQ zinc-binding 369 440 IPR032284 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0291 Prci-Chr9 14093858 14106459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0291 35 371 Eukaryotic Initiation Factors Gene Family AT3G19760 19.364 1.37e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0291 K10901 - gmx:100819601 1063.91