Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0196 ATGGTGGTTGCCCACGGCAGATCCGGTGGAATCGTCGATAGTGGCCGGTCAGAATCCATTTCTACAGTTCTATTGAACGAAGTTATGGGAGAAGTAGTGCGAGTCAAATCAGAGCAAGTAATGGTGTCTGATGAGGACATCGATCATTCCAACTCTGGTGACTACTGTGATGTTGAAGGTGAACTACATGACGGAGTTTTCAGTGAGGATTCAGGAAGGAAGAGCTCACAAGTGACGGATGAGGGGCGAGTTCACGTCAAGTTAGAGGAACCGGGTGAAGCGGTGGATGATATCGACGGCGGTGTTGGAGTTAATGGATCGTCGTACTCATCGTCGGTCGACTTGCCGAAACCGATGGAAGGGTTGCACGAGGTTGGCCCGCCGCCTTTCCTCAAGAAGACTTTCGCTATGGTGGAGGACCCGATGACCGACTCGATTGTGTCCTGGAGCGAAGCTCGTGATAGCTTTATCGTTTGGGATTCCCACGAATTTTGCAAAATTCTTCTCTCTAAGTACTTCAAACACAGCAATTTTTCGAGCTTCATTCGTCAGCTTAATACATACGGATTTCGGAAGATTGATTCAGACCGTTGGGAGTTTGCCAACGAGGGATTTCAGGCTGGAAAGAAGCATTTACTGAAGAACATCAGGAGAAGGAGCAAGTTTAACAAACTGCAACAACGAGGAGCATTGACTTCCATGAAACCCGGCCTGGAGGCTGAAGTTGAGAGACTGCGGAAGGATCAGAACATGCTGAAAGTTGAAATGCTGAAGCTGAGACAGCAACAAGAGACTTCACAGGTTCAGCTTGTAAATGTTAAAGAACGAGTTCGGTCTGCTGAGTTGAAGCAGTGCCAAATGATGCATTTCCTGACCAAAATGGCAAGAAGACCGACGTTGGTTCAGCAGTTAATCGAGAAGGTAAAGCGAAAAAGAGAGCTCAGTGGGGGTGAGATCGGTAAGAGACCCAGATTGCTTCGAACCCATTCCCCTTTGAACTTCCCTAAGGCCATGGACACCATTGCTGATGTTGATCATAGACAAGGTTATAAGGACTTGGCTTCATTGCAATCAGACCTCAATGGACTCTTGTCTGAAACAGTAGACGATAGCAGAACGCAGCCTTCAGCCCCTTTTTCTCTGAAAGATGAACCGTGCAGTCCTATATAG 1170 0.4752 MVVAHGRSGGIVDSGRSESISTVLLNEVMGEVVRVKSEQVMVSDEDIDHSNSGDYCDVEGELHDGVFSEDSGRKSSQVTDEGRVHVKLEEPGEAVDDIDGGVGVNGSSYSSSVDLPKPMEGLHEVGPPPFLKKTFAMVEDPMTDSIVSWSEARDSFIVWDSHEFCKILLSKYFKHSNFSSFIRQLNTYGFRKIDSDRWEFANEGFQAGKKHLLKNIRRRSKFNKLQQRGALTSMKPGLEAEVERLRKDQNMLKVEMLKLRQQQETSQVQLVNVKERVRSAELKQCQMMHFLTKMARRPTLVQQLIEKVKRKRELSGGEIGKRPRLLRTHSPLNFPKAMDTIADVDHRQGYKDLASLQSDLNGLLSETVDDSRTQPSAPFSLKDEPCSPI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0196 389 FunFam Heat shock transcription factor 1 123 220 - -
Prci9g0196 389 ProSitePatterns HSF-type DNA-binding domain signature. 169 193 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci9g0196 389 PRINTS Heat shock factor (HSF) domain signature 181 193 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci9g0196 389 PRINTS Heat shock factor (HSF) domain signature 130 153 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci9g0196 389 PRINTS Heat shock factor (HSF) domain signature 168 180 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci9g0196 389 SMART hsfneu3 126 219 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci9g0196 389 SUPERFAMILY "Winged helix" DNA-binding domain 126 219 IPR036390 -
Prci9g0196 389 Pfam HSF-type DNA-binding 130 219 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci9g0196 389 Coils Coil 242 262 - -
Prci9g0196 389 Gene3D - 123 220 IPR036388 -
Prci9g0196 389 MobiDBLite consensus disorder prediction 368 389 - -
Prci9g0196 389 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 116 322 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0196 Prci-Chr9 8740782 8743760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0196 116 386 HSF AT2G26150 48.014 1.94e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci9g0196 HSF_DNA-bind 2.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0196 K09419 - gmx:100818430 410.223