Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0077 ATGGATTCGGATCAAGGGAAGCTTTTCATCGGTGGAATATCATGGGAGACATCGGAGGATAAGCTGAAGGAGCATTTCAGCGACTATGGCGATGTCATTCACGCGTCAGTTATGAGGGAGAAGAATACTGGGAAGCCTAGAGGATTTGGGTTCGTGGTGTTCGCAGATCCTTCCATTCTTGATAGGGTTCTTGAAGACAAGCACGTTATTGATGGGAGAACGGTAGATGCCAAGAAGGCTTTATCAAGAGAGGATCAACAAATTTCTGCCACTTCCAGAACTGGAAATCCCAATTTTGCCAGGAATGCTGGAAACGGTGGAAATTTGAAGACCAAAAAGATCTTTGTCGGAGGATTGCCTCCCACCTTGACTGAAGAAAAATTTCGCCAGTATTTTGAGGCTTATGGCCATGTAACTGATGTTGTAGTCATGTATGACCAAAATACTGGTCGACCACGAGGATTTGGGTTTATATCCTTTGATACTGAAGAGGCAGTTGACAGGGTTTTGCTCAAGCCATTTCATGATCTAAATGGTAAGCAAGTGGAAGTGAAGCGTGCACTCCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGTATGATGAGTAGTGCTGGGTATCAAGGGTATGGCGCTTCGGGTGGTAACCAAAATTCATATGATGGTCGGATGGATTCTAGCAGGTATGTGCAACCTCAAAGCACTGGGGGTGGATTCCCACCTTATGGTTCGTCTGGATATACTGCTGCTGGGTATGGCTATGGTCCTGCTAATAATGGCATGGGTTTTGGTGGGTATGGAGGTTTTGGTGGTGGTGGTACTGGGTATGGTGGACCTGCTGGTGCAGCCTATGGGAGTCCAAATGTCCCTAATGCTGCTTATGCTGGTGGCCCACCAGGTGGCCCAAGGAGTTCATGGTCTGCTCAAGCTCCCTCTGGTTATGGTTCTATGGGCTATGGAAATGCTGCTTCATGGGGTGCTCCAACTGGTGGTGGCCCTGGTTCTGCATCTGCAGGTCAGTCCCCTGGTGGAACTGCCGGATATGGTAATCAGGGTTATGGATATGGTGGGTATGGCGGGTATGGTGGAAATGATACTTCATATGGGAATCCAGGTGTATATGGAGCTGTTGGAGGGCGTTCTGGAAGTGCTCCCAATAGTAACACTAGTGGTCCTGGAGGGAATGAATTTCAAGGAAGTGGTGGCAGCTATATGGGTAGTGGCTATGCTGATGTAAATGGAAATTCAGGATATGGAAATGCTGCATGGAGATCTGATCCAGCACAAGCGCCCGGAAGTTATGGTACTCCTCAGGGAAATGGTCCACAAAGTGGGCAAGTTGGCTATGGTGGTGGCTACGGTGGAGCTCAGTCCCGGCAAGCCCAACAACAGTAA 1392 0.4878 MDSDQGKLFIGGISWETSEDKLKEHFSDYGDVIHASVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKKALSREDQQISATSRTGNPNFARNAGNGGNLKTKKIFVGGLPPTLTEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLLKPFHDLNGKQVEVKRALPKDANPGASGRMMSSAGYQGYGASGGNQNSYDGRMDSSRYVQPQSTGGGFPPYGSSGYTAAGYGYGPANNGMGFGGYGGFGGGGTGYGGPAGAAYGSPNVPNAAYAGGPPGGPRSSWSAQAPSGYGSMGYGNAASWGAPTGGGPGSASAGQSPGGTAGYGNQGYGYGGYGGYGGNDTSYGNPGVYGAVGGRSGSAPNSNTSGPGGNEFQGSGGSYMGSGYADVNGNSGYGNAAWRSDPAQAPGSYGTPQGNGPQSGQVGYGGGYGGAQSRQAQQQ 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0077 463 CDD RRM2_Hrp1p 113 190 - -
Prci9g0077 463 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Prci9g0077 463 MobiDBLite consensus disorder prediction 379 398 - -
Prci9g0077 463 Gene3D - 110 193 IPR012677 -
Prci9g0077 463 SUPERFAMILY RNA-binding domain, RBD 110 218 IPR035979 GO:0003676
Prci9g0077 463 SUPERFAMILY RNA-binding domain, RBD 3 108 IPR035979 GO:0003676
Prci9g0077 463 Gene3D - 1 92 IPR012677 -
Prci9g0077 463 FunFam heterogeneous nuclear ribonucleoprotein 1 107 222 - -
Prci9g0077 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Prci9g0077 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 172 IPR000504 GO:0003723
Prci9g0077 463 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Prci9g0077 463 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 463 - -
Prci9g0077 463 MobiDBLite consensus disorder prediction 380 398 - -
Prci9g0077 463 MobiDBLite consensus disorder prediction 414 463 - -
Prci9g0077 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Prci9g0077 463 MobiDBLite consensus disorder prediction 84 105 - -
Prci9g0077 463 SMART rrm1_1 7 78 IPR000504 GO:0003723
Prci9g0077 463 SMART rrm1_1 113 185 IPR000504 GO:0003723
Prci9g0077 463 MobiDBLite consensus disorder prediction 81 105 - -
Prci9g0077 463 MobiDBLite consensus disorder prediction 430 444 - -
Prci9g0077 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0077 Prci-Chr9 1964362 1973774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0077 6 226 Eukaryotic Initiation Factors Gene Family AT2G23350 24.893 1.57e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0077 K14411 - gmx:100811267 614.379