Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0025 ATGGCAGATCTTGCTAGCTATGGGAATTCTGATCGTGATATTGAGCAAGCACTTGTAGCTTTAAAAAAAGGCTCCCAATTACTTAAGTATAATCGAAAAGGGAAGCCAAAATTTCGTCCCTTCAGACTCTCATCCGATGCTACAACATTGATTTGGATTTCTCATGGACGGGAAAAAAATCTGAAATTGTCTTCTGTTTCACGTATCATTCCCGGACAAAGAACTGCTGTCTTTAGAAGGCATTTGCGCCCAGAAAAGGATTATCTATCATTTTCACTTGTTTATAAAAACGGGGAACGAACACTTGATCTGATTTGCAAGGACAAAGCTGAGGCAGAGATATGGTTTGGAGGCCTTAAAGCATTAATTTCTCCAGGACAACACACCCTACGATCTAAAAGTAACTTATATGATCTACAGGATGGTGTCGACTTTTTCCCAATTAACCGTCCTTTTGGTGCAACATTAGAGTTTACTTCAAGCATTGCACGTGGCAGGGATTCCACAGATTCAGGATCTCGTGATTCTCCATTGTATTGGGCAACCTCAGATGTGACATCAGAACGTTCAAATATGCAACTAAGGACAAGTGCTTCAGATGGCTTCCGTGTTAGTGTGTCAAGCACACCTAGTTGTTCAAGTGGAGGATCAGGACCAGACGACATAGAGTCATTAGGTGATGTTTATATATGGGGAGATGTTTGGATTGATGGGCCTTCACCTGATACATTGGGAAGTCAAGTTGCTTTGATGACAGATGTGCTGGTTCCTCGGCCATTGGAGTCAAATGTTGTTCTTGATGTTCAACAAATTGCATCTGGTGTGCGTCACATTGCTCTAGTTACAAGGCAGGGAGAGGTTTTTTCTTGGGGTGAGGAATCCGGGGGAAGACTTGGTCATGGGATTGATAAAGACTTCTGCCACCCTCATCTTATTGAGTTCCTCTCTGTTCAAAATGTTGAATTTATTGCATGTGGGGAGTATCATACGTGTGCTATTTCTACGTCTGGTGATCTATTCACCTGGGGAGATGGTGCTTATAATGCTGGGCTTCTTGGTCATGGCAGTGATGTTAGTCACTGGATACCAAAGAGGGTCACTGGCCCTTTAGAAGGGCTTCAAGTTTTACACATTTCTTGCGGTACATGGCATTCTGCATTAGCAACCTCTAATGGGAAATTGTTTACCTTTGGAGATGGAACATTTGGTGTCTTGGGCCATGGAGATCGGATGAGTGTGTCATATCCAAGGGAGGTACAATCATTGAGCGGATTGAAGACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCCATTGTAGAGGTTATGGGTCATCAAGGTTCTAATATTTCATCCAGGAAGCTCTTCACTTGGGGTGATGGTGACAAGTATCGTTTGGGTCATGGAAACAAGGAAACATACCTTCAACCAACTTGTGTCTCTGCACTAATTGATTATAATTTCCACCAGATAGCTTGCGGGTACACTTTGACTGTTGCCCTAGATACATCAGGTCTTGTATTTACTATGGGCAGCACTGCGTATGGTCAGTTAGGAAATCCTTTGTCTGATGGAAAAACACCTGCAAAGGTTCAAGATAAGTTGGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCGCATCATGTTGCTGTCTTGACATCAAGAAGCGAACTATATACTTGGGGGAGGGGAGCGAATGGAAGATTGGGGCATGGGGACACAGAAGACCGAAAATCTCCAACACTGGTTGAAGGTTTAAAAGATAGGCATGTAAAAAATATCTCATGTGGCTCAAATTTTACATCTTGCATATGCATCCATAAATGGGTTTCTGGATCTGATCAATCTATTTGCTCCGGTTGTCGGCAAGCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATAATTGTGGGTTGGTGCATTGCCATGCTTGTAGTTCTAAGAAGGCATTGAGAGCAGCATTGGCTCCCACACCAGGAAAACCACATCGTGTGTGTGATGCTTGTTATAGCAAGCTTAAAGCTACTGAGACTGGTAGTGCTTCCACTTCTAGTAGAAAACCTACTCCTCCTCGTCAATCCATAGATGAGAGGGAAAGATTAGACCGGGGAGAAACAAGGTCTTCAAGAGTTCTCATGTCTTCTATCACTGAGCCAGTAAAATTCCTTGAGATATGGGGCAATAAGCCCGAATCTAAACACGATTTTTCTTCCCTTGCTCGAAATCCACAATCAATTTCACAATTCAAAGATGTTGCATTTCCAAATTCATTGAAGCCCATTCATAATGCATTCAAGCCTGCTTCTGTAACTTTAAGTCCACCACGAACTCCACCGGCCAATTCAAGACCTGCATCGCCATATACAAGAAGACCAAGTCCACCACGTTCTCCCACCCCTGGATTTTCTAGAACCCTTATCGAAAATTTGAGGAAATCAAATGAGCTTCTGAACCAAGAAATCTCAAAATTACAAAATAAAGTTCGAAGTTTGAAACAGAAGAACGACGTGCAAGATATGGAGATTCAGAAGCTAAAGAAAAATGTTGAGAAAGCAACCTTGTTGACTGGAGAGGAATCTTCTAAGCAGAGTCTAGCTAGGGAATTTATTAAGACCATGAAAGATCAGTTGAAGGATGTGACGCAGAATTTGCCACCAGAGAGTCTAGACAGTGAGACCTTGAGAAATATCCATGCTCAAGCTGAAGATTTTCTAAGGGAAAATACAGAATCTGAAGCATCATCTTCCGTACTTCCAAGCTTGGAGCCTAATCAAGAAATTGGACGTGATACATCAGTTTCAGGTATTGATGGTTCCAAATCGCAAGAACATGAAGTTGAAGAAACTGTAGATTCTACTGGAGCTGAACCATCTCATGATCCAGGAAATTCTCTTCAAGAAAGCAATAGATCATCTATATCTAGTATAGAGGTAGCAACTCCTCCACAAAGCTCAGAAAATGATTCACAATCACCAGACTCAATGAAACTAGGGAGAGAGAAAGAATCACAGGTCATCGAACAATTTGAACCTGGTGTTTATGTGACGCTAGTGGTATGGCCAAGTGGTATAAAGGTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTTGATGCACAACAAGCAGAAGAATGGTGGAATACAAACAAAGATAGGGTGTTTAGAAAGTATAGTTCATCAGCAACAAATTCTTCAGCTTCTGGGTCGTCATCATCTAGAACTAAACCCTTAGCTGAAGAGAACACTTAA 3255 0.4175 MADLASYGNSDRDIEQALVALKKGSQLLKYNRKGKPKFRPFRLSSDATTLIWISHGREKNLKLSSVSRIIPGQRTAVFRRHLRPEKDYLSFSLVYKNGERTLDLICKDKAEAEIWFGGLKALISPGQHTLRSKSNLYDLQDGVDFFPINRPFGATLEFTSSIARGRDSTDSGSRDSPLYWATSDVTSERSNMQLRTSASDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGDVWIDGPSPDTLGSQVALMTDVLVPRPLESNVVLDVQQIASGVRHIALVTRQGEVFSWGEESGGRLGHGIDKDFCHPHLIEFLSVQNVEFIACGEYHTCAISTSGDLFTWGDGAYNAGLLGHGSDVSHWIPKRVTGPLEGLQVLHISCGTWHSALATSNGKLFTFGDGTFGVLGHGDRMSVSYPREVQSLSGLKTIKVACGVWHTAAIVEVMGHQGSNISSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIDYNFHQIACGYTLTVALDTSGLVFTMGSTAYGQLGNPLSDGKTPAKVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDTEDRKSPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGSDQSICSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYSKLKATETGSASTSSRKPTPPRQSIDERERLDRGETRSSRVLMSSITEPVKFLEIWGNKPESKHDFSSLARNPQSISQFKDVAFPNSLKPIHNAFKPASVTLSPPRTPPANSRPASPYTRRPSPPRSPTPGFSRTLIENLRKSNELLNQEISKLQNKVRSLKQKNDVQDMEIQKLKKNVEKATLLTGEESSKQSLAREFIKTMKDQLKDVTQNLPPESLDSETLRNIHAQAEDFLRENTESEASSSVLPSLEPNQEIGRDTSVSGIDGSKSQEHEVEETVDSTGAEPSHDPGNSLQESNRSSISSIEVATPPQSSENDSQSPDSMKLGREKESQVIEQFEPGVYVTLVVWPSGIKVFKRVRFSKRRFDAQQAEEWWNTNKDRVFRKYSSSATNSSASGSSSSRTKPLAEENT 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0025 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 688 IPR013083 -
Prci9g0025 1084 Gene3D - 451 609 IPR009091 -
Prci9g0025 1084 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 558 609 IPR000408 -
Prci9g0025 1084 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Prci9g0025 1084 Pfam Transcription factor regulating root and shoot growth via Pin3 1005 1059 IPR013591 -
Prci9g0025 1084 MobiDBLite consensus disorder prediction 1060 1084 - -
Prci9g0025 1084 SMART fyve_4 608 677 IPR000306 GO:0046872
Prci9g0025 1084 MobiDBLite consensus disorder prediction 958 994 - -
Prci9g0025 1084 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Prci9g0025 1084 PRINTS Chromosome condensation regulator RCC1 signature 553 574 IPR000408 -
Prci9g0025 1084 PRINTS Chromosome condensation regulator RCC1 signature 495 513 IPR000408 -
Prci9g0025 1084 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Prci9g0025 1084 PRINTS Chromosome condensation regulator RCC1 signature 287 303 IPR000408 -
Prci9g0025 1084 PRINTS Chromosome condensation regulator RCC1 signature 394 408 IPR000408 -
Prci9g0025 1084 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 443 IPR000408 -
Prci9g0025 1084 CDD FYVE_like_SF 620 672 - -
Prci9g0025 1084 SUPERFAMILY RCC1/BLIP-II 225 611 IPR009091 -
Prci9g0025 1084 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 271 281 IPR000408 -
Prci9g0025 1084 ProSiteProfiles BRX domain profile. 1005 1060 IPR013591 -
Prci9g0025 1084 MobiDBLite consensus disorder prediction 909 1005 - -
Prci9g0025 1084 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 391 IPR000408 -
Prci9g0025 1084 MobiDBLite consensus disorder prediction 942 956 - -
Prci9g0025 1084 MobiDBLite consensus disorder prediction 693 709 - -
Prci9g0025 1084 CDD PH_PLC_plant-like 12 124 - -
Prci9g0025 1084 SUPERFAMILY FYVE/PHD zinc finger 610 677 IPR011011 -
Prci9g0025 1084 MobiDBLite consensus disorder prediction 681 714 - -
Prci9g0025 1084 Gene3D - 13 131 IPR011993 -
Prci9g0025 1084 Gene3D - 182 450 IPR009091 -
Prci9g0025 1084 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 885 - -
Prci9g0025 1084 FunFam PH, RCC1 and FYVE domains-containing protein 1 197 445 - -
Prci9g0025 1084 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 506 557 IPR000408 -
Prci9g0025 1084 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 430 440 IPR000408 -
Prci9g0025 1084 MobiDBLite consensus disorder prediction 769 806 - -
Prci9g0025 1084 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 336 IPR000408 -
Prci9g0025 1084 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 454 505 IPR000408 -
Prci9g0025 1084 Coils Coil 809 850 - -
Prci9g0025 1084 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 614 676 IPR017455 -
Prci9g0025 1084 Pfam FYVE zinc finger 610 676 IPR000306 GO:0046872
Prci9g0025 1084 Pfam Regulator of chromosome condensation (RCC1) repeat 391 440 IPR000408 -
Prci9g0025 1084 Pfam Regulator of chromosome condensation (RCC1) repeat 285 333 IPR000408 -
Prci9g0025 1084 Pfam Regulator of chromosome condensation (RCC1) repeat 336 387 IPR000408 -
Prci9g0025 1084 Pfam Regulator of chromosome condensation (RCC1) repeat 559 606 IPR000408 -
Prci9g0025 1084 Pfam Regulator of chromosome condensation (RCC1) repeat 505 554 IPR000408 -
Prci9g0025 1084 Pfam Regulator of chromosome condensation (RCC1) repeat 456 502 IPR000408 -
Prci9g0025 1084 MobiDBLite consensus disorder prediction 912 941 - -
Prci9g0025 1084 SUPERFAMILY PH domain-like 13 123 - -
Prci9g0025 1084 Pfam Transcription factor BRX N-terminal domain 860 895 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0025 Prci-Chr9 900653 909539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0025 1008 1068 Major Intrinsic Protein MIP AT1G31880 39.344 1.01e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0025 - - qsa:O6P43_021414 1503.42