Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0023 ATGGCAGATCTTGCTAGCTATGGGAATTCTGATCGTGATATTGAGCAAGCACTTGTAGCTTTAAAAAAAGGCTCCCAATTACTTAAGTATAATCGAAAAGGGAAGCCAAAATTTCGTCCCTTCAGACTCTCATCCGATGCTACAACATTGATTTGGATTTCTCATGGACGGGAAAAAAATCTGAAATTGTCTTCTGTTTCACGTATCATTCCCGGACAAAGAACTATTTGCAAGGACAAAGCTGAGGCAGAGATATGGTTTGGAGGCCTTAAAGCATTAATTTCTCCAGGACAACACACCCTACGATCTAAAAGTAACTTATATGATCTACAGGATGGTGTCGACTTTTTCCCAATTAACCGTCCTTTTGGTGCAACATTAGAGTTTACTTCAAGCATTGCACGTGGCAGGGATTCCACAGATTCAGGATCTCGTGATTCTCCATTGTATTGGGCAACCTCAGATGTGACATCAGAACGTTCAAATATGCAACTAAGGACAAGTGCTTCAGATGGCTTCCGTGTTAGTGTGTCAAGCACACCTAGTTGTTCAAGTGGAGGATCAGGACCAGACGACATAGAGTCATTAGGTGATGTTTATATATGGGGAGATGTTTGGATTGATGGGCCTTCACCTGATACATTGGGAAGTCAAGTTGCTTTGATGACAGATGTGCTGGTTCCTCGGCCATTGGAGTCAAATGTTGTTCTTGATGTTCAACAAATTGCATCTGGTGTGCGTCACATTGCTCTAGTTACAAGGCAGGGAGAGGTTTTTTCTTGGGGTGAGGAATCCGGGGGAAGACTTGGTCATGGGATTGATAAAGACTTCTGCCACCCTCATCTTATTGAGTTCCTCTCTGTTCAAAATGTTGAATTTATTGCATGTGGGGAGTATCATACGTGTGCTATTTCTACGTCTGGTGATCTATTCACCTGGGGAGATGGTGCTTATAATGCTGGGCTTCTTGGTCATGGCAGTGATGTTAGTCACTGGATACCAAAGAGGGTCACTGGCCCTTTAGAAGGGCTTCAAGTTTTACACATTTCTTGCGGTACATGGCATTCTGCATTAGCAACCTCTAATGGGAAATTGTTTACCTTTGGAGATGGAACATTTGGTGTCTTGGGCCATGGAGATCGGATGAGTGTGTCATATCCAAGGGAGGTACAATCATTGAGCGGATTGAAGACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCCATTGTAGAGGTTATGGGTCATCAAGGTTCTAATATTTCATCCAGGAAGCTCTTCACTTGGGGTGATGGTGACAAGTATCGTTTGGGTCATGGAAACAAGGAAACATACCTTCAACCAACTTGTGTCTCTGCACTAATTGATTATAATTTCCACCAGATAGCTTGCGGGTACACTTTGACTGTTGCCCTAGATACATCAGGTCTTGTATTTACTATGGGCAGCACTGCGTATGGTCAGTTAGGAAATCCTTTGTCTGATGGAAAAACACCTGCAAAGGTTCAAGATAAGTTGGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCGCATCATGTTGCTGTCTTGACATCAAGAAGCGAACTATATACTTGGGGGAGGGGAGCGAATGGAAGATTGGGGCATGGGGACACAGAAGACCGAAAATCTCCAACACTGGTTGAAGGTTTAAAAGATAGGCATGTAAAAAATATCTCATGTGGCTCAAATTTTACATCTTGCATATGCATCCATAAATGGGTTTCTGGATCTGATCAATCTATTTGCTCCGGTTGTCGGCAAGCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATAATTGTGGGTTGGTGCATTGCCATGCTTGTAGTTCTAAGAAGGCATTGAGAGCAGCATTGGCTCCCACACCAGGAAAACCACATCGTGTGTGTGATGCTTGTTATAGCAAGCTTAAAGCTACTGAGACTGGTAGTGCTTCCACTTCTAGTAGAAAACCTACTCCTCCTCGTCAATCCATAGATGAGAGGGAAAGATTAGACCGGGGAGAAACAAGGTCTTCAAGAGTTCTCATGTCTTCTATCACTGAGCCAGTAAAATTCCTTGAGATATGGGGCAATAAGCCCGAATCTAAACACGATTTTTCTTCCCTTGCTCGAAATCCACAATCAATTTCACAATTCAAAGATGTTGCATTTCCAAATTCATTGAAGCCCATTCATAATGCATTCAAGCCTGCTTCTGTAACTTTAAGTCCACCACGAACTCCACCGGCCAATTCAAGACCTGCATCGCCATATACAAGAAGACCAAGTCCACCACGTTCTCCCACCCCTGGATTTTCTAGAACCCTTATCGAAAATTTGAGGAAATCAAATGAGCTTCTGAACCAAGAAATCTCAAAATTACAAAATAAAGTTCGAAGTTTGAAACAGAAGAACGACGTGCAAGATATGGAGATTCAGAAGCTAAAGAAAAATGTTGAGAAAGCAACCTTGTTGACTGGAGAGGAATCTTCTAAGCAGAGTCTAGCTAGGGAATTTATTAAGACCATGAAAGATCAGTTGAAGGATGTGACGCAGAATTTGCCACCAGAGAGTCTAGACAGTGAGACCTTGAGAAATATCCATGCTCAAGCTGAAGATTTTCTAAGGGAAAATACAGAATCTGAAGCATCATCTTCCGTACTTCCAAGCTTGGAGCCTAATCAAGAAATTGGACGTGATACATCAGTTTCAGGTATTGATGGTTCCAAATCGCAAGAACATGAAGTTGAAGAAACTGTAGATTCTACTGGAGCTGAACCATCTCATGATCCAGGAAATTCTCTTCAAGAAAGCAATAGATCATCTATATCTAGTATAGAGGTAGCAACTCCTCCACAAAGCTCAGAAAATGATTCACAATCACCAGACTCAATGAAACTAGGGAGAGAGAAAGAATCACAGGTCATCGAACAATTTGAACCTGGTGTTTATGTGACGCTAGTGGTATGGCCAAGTGGTATAAAGGTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTTGATGCACAACAAGCAGAAGAATGGTGGAATACAAACAAAGATAGGGTGTTTAGAAAGTATAGTTCATCAGCAACAAATTCTTCAGCTTCTGGGTCGTCATCATCTAGAACTAAACCCTTAGCTGAAGAGAACACTTAA 3168 0.4182 MADLASYGNSDRDIEQALVALKKGSQLLKYNRKGKPKFRPFRLSSDATTLIWISHGREKNLKLSSVSRIIPGQRTICKDKAEAEIWFGGLKALISPGQHTLRSKSNLYDLQDGVDFFPINRPFGATLEFTSSIARGRDSTDSGSRDSPLYWATSDVTSERSNMQLRTSASDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGDVWIDGPSPDTLGSQVALMTDVLVPRPLESNVVLDVQQIASGVRHIALVTRQGEVFSWGEESGGRLGHGIDKDFCHPHLIEFLSVQNVEFIACGEYHTCAISTSGDLFTWGDGAYNAGLLGHGSDVSHWIPKRVTGPLEGLQVLHISCGTWHSALATSNGKLFTFGDGTFGVLGHGDRMSVSYPREVQSLSGLKTIKVACGVWHTAAIVEVMGHQGSNISSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIDYNFHQIACGYTLTVALDTSGLVFTMGSTAYGQLGNPLSDGKTPAKVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDTEDRKSPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGSDQSICSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYSKLKATETGSASTSSRKPTPPRQSIDERERLDRGETRSSRVLMSSITEPVKFLEIWGNKPESKHDFSSLARNPQSISQFKDVAFPNSLKPIHNAFKPASVTLSPPRTPPANSRPASPYTRRPSPPRSPTPGFSRTLIENLRKSNELLNQEISKLQNKVRSLKQKNDVQDMEIQKLKKNVEKATLLTGEESSKQSLAREFIKTMKDQLKDVTQNLPPESLDSETLRNIHAQAEDFLRENTESEASSSVLPSLEPNQEIGRDTSVSGIDGSKSQEHEVEETVDSTGAEPSHDPGNSLQESNRSSISSIEVATPPQSSENDSQSPDSMKLGREKESQVIEQFEPGVYVTLVVWPSGIKVFKRVRFSKRRFDAQQAEEWWNTNKDRVFRKYSSSATNSSASGSSSSRTKPLAEENT 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0023 1055 SUPERFAMILY RCC1/BLIP-II 196 582 IPR009091 -
Prci9g0023 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 308 362 IPR000408 -
Prci9g0023 1055 MobiDBLite consensus disorder prediction 880 976 - -
Prci9g0023 1055 Pfam Transcription factor BRX N-terminal domain 831 866 IPR027988 -
Prci9g0023 1055 MobiDBLite consensus disorder prediction 929 965 - -
Prci9g0023 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 477 528 IPR000408 -
Prci9g0023 1055 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 242 252 IPR000408 -
Prci9g0023 1055 Gene3D - 13 76 IPR011993 -
Prci9g0023 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 256 307 IPR000408 -
Prci9g0023 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 425 476 IPR000408 -
Prci9g0023 1055 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 856 - -
Prci9g0023 1055 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 401 411 IPR000408 -
Prci9g0023 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 363 414 IPR000408 -
Prci9g0023 1055 MobiDBLite consensus disorder prediction 652 685 - -
Prci9g0023 1055 MobiDBLite consensus disorder prediction 1031 1055 - -
Prci9g0023 1055 MobiDBLite consensus disorder prediction 664 680 - -
Prci9g0023 1055 SUPERFAMILY FYVE/PHD zinc finger 581 648 IPR011011 -
Prci9g0023 1055 FunFam PH, RCC1 and FYVE domains-containing protein 1 168 416 - -
Prci9g0023 1055 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 529 580 IPR000408 -
Prci9g0023 1055 MobiDBLite consensus disorder prediction 883 912 - -
Prci9g0023 1055 PRINTS Chromosome condensation regulator RCC1 signature 365 379 IPR000408 -
Prci9g0023 1055 PRINTS Chromosome condensation regulator RCC1 signature 308 324 IPR000408 -
Prci9g0023 1055 PRINTS Chromosome condensation regulator RCC1 signature 258 274 IPR000408 -
Prci9g0023 1055 PRINTS Chromosome condensation regulator RCC1 signature 466 484 IPR000408 -
Prci9g0023 1055 PRINTS Chromosome condensation regulator RCC1 signature 524 545 IPR000408 -
Prci9g0023 1055 PRINTS Chromosome condensation regulator RCC1 signature 349 365 IPR000408 -
Prci9g0023 1055 SUPERFAMILY PH domain-like 13 94 - -
Prci9g0023 1055 MobiDBLite consensus disorder prediction 913 927 - -
Prci9g0023 1055 ProSiteProfiles BRX domain profile. 976 1031 IPR013591 -
Prci9g0023 1055 MobiDBLite consensus disorder prediction 740 777 - -
Prci9g0023 1055 Pfam Regulator of chromosome condensation (RCC1) repeat 362 411 IPR000408 -
Prci9g0023 1055 Pfam Regulator of chromosome condensation (RCC1) repeat 256 304 IPR000408 -
Prci9g0023 1055 Pfam Regulator of chromosome condensation (RCC1) repeat 476 525 IPR000408 -
Prci9g0023 1055 Pfam Regulator of chromosome condensation (RCC1) repeat 530 577 IPR000408 -
Prci9g0023 1055 Pfam Regulator of chromosome condensation (RCC1) repeat 307 358 IPR000408 -
Prci9g0023 1055 Pfam Regulator of chromosome condensation (RCC1) repeat 427 473 IPR000408 -
Prci9g0023 1055 SMART fyve_4 579 648 IPR000306 GO:0046872
Prci9g0023 1055 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 585 647 IPR017455 -
Prci9g0023 1055 CDD FYVE_like_SF 591 643 - -
Prci9g0023 1055 Gene3D - 422 580 IPR009091 -
Prci9g0023 1055 Coils Coil 780 821 - -
Prci9g0023 1055 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 659 IPR013083 -
Prci9g0023 1055 Pfam Transcription factor regulating root and shoot growth via Pin3 976 1030 IPR013591 -
Prci9g0023 1055 Gene3D - 159 421 IPR009091 -
Prci9g0023 1055 Pfam FYVE zinc finger 581 647 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0023 Prci-Chr9 900653 909539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0023 979 1039 Major Intrinsic Protein MIP AT1G31880 39.344 8.93e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0023 - - qsa:O6P43_021414 1438.32