Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0022 ATGGCAGATCTTGCTAGCTATGGGAATTCTGATCGTGATATTGAGCAAGCTGTCTTTAGAAGGCATTTGCGCCCAGAAAAGGATTATCTATCATTTTCACTTGTTTATAAAAACGGGGAACGAACACTTGATCTGATTTGCAAGGACAAAGCTGAGGCAGAGATATGGTTTGGAGGCCTTAAAGCATTAATTTCTCCAGGACAACACACCCTACGATCTAAAAGTAACTTATATGATCTACAGGATGGTGTCGACTTTTTCCCAATTAACCGTCCTTTTGGTGCAACATTAGAGTTTACTTCAAGCATTGCACGTGGCAGGGATTCCACAGATTCAGGATCTCGTGATTCTCCATTGTATTGGGCAACCTCAGATGTGACATCAGAACGTTCAAATATGCAACTAAGGACAAGTGCTTCAGATGGCTTCCGTGTTAGTGTGTCAAGCACACCTAGTTGTTCAAGTGGAGGATCAGGACCAGACGACATAGAGTCATTAGGTGATGTTTATATATGGGGAGATGTTTGGATTGATGGGCCTTCACCTGATACATTGGGAAGTCAAGTTGCTTTGATGACAGATGTGCTGGTTCCTCGGCCATTGGAGTCAAATGTTGTTCTTGATGTTCAACAAATTGCATCTGGTGTGCGTCACATTGCTCTAGTTACAAGGCAGGGAGAGGTTTTTTCTTGGGGTGAGGAATCCGGGGGAAGACTTGGTCATGGGATTGATAAAGACTTCTGCCACCCTCATCTTATTGAGTTCCTCTCTGTTCAAAATGTTGAATTTATTGCATGTGGGGAGTATCATACGTGTGCTATTTCTACGTCTGGTGATCTATTCACCTGGGGAGATGGTGCTTATAATGCTGGGCTTCTTGGTCATGGCAGTGATGTTAGTCACTGGATACCAAAGAGGGTCACTGGCCCTTTAGAAGGGCTTCAAGTTTTACACATTTCTTGCGGTACATGGCATTCTGCATTAGCAACCTCTAATGGGAAATTGTTTACCTTTGGAGATGGAACATTTGGTGTCTTGGGCCATGGAGATCGGATGAGTGTGTCATATCCAAGGGAGGTACAATCATTGAGCGGATTGAAGACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCCATTGTAGAGGTTATGGGTCATCAAGGTTCTAATATTTCATCCAGGAAGCTCTTCACTTGGGGTGATGGTGACAAGTATCGTTTGGGTCATGGAAACAAGGAAACATACCTTCAACCAACTTGTGTCTCTGCACTAATTGATTATAATTTCCACCAGATAGCTTGCGGGTACACTTTGACTGTTGCCCTAGATACATCAGGTCTTGTATTTACTATGGGCAGCACTGCGTATGGTCAGTTAGGAAATCCTTTGTCTGATGGAAAAACACCTGCAAAGGTTCAAGATAAGTTGGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCGCATCATGTTGCTGTCTTGACATCAAGAAGCGAACTATATACTTGGGGGAGGGGAGCGAATGGAAGATTGGGGCATGGGGACACAGAAGACCGAAAATCTCCAACACTGGTTGAAGGTTTAAAAGATAGGCATGTAAAAAATATCTCATGTGGCTCAAATTTTACATCTTGCATATGCATCCATAAATGGGTTTCTGGATCTGATCAATCTATTTGCTCCGGTTGTCGGCAAGCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATAATTGTGGGTTGGTGCATTGCCATGCTTGTAGTTCTAAGAAGGCATTGAGAGCAGCATTGGCTCCCACACCAGGAAAACCACATCGTGTGTGTGATGCTTGTTATAGCAAGCTTAAAGCTACTGAGACTGGTAGTGCTTCCACTTCTAGTAGAAAACCTACTCCTCCTCGTCAATCCATAGATGAGAGGGAAAGATTAGACCGGGGAGAAACAAGGTCTTCAAGAGTTCTCATGTCTTCTATCACTGAGCCAGTAAAATTCCTTGAGATATGGGGCAATAAGCCCGAATCTAAACACGATTTTTCTTCCCTTGCTCGAAATCCACAATCAATTTCACAATTCAAAGATGTTGCATTTCCAAATTCATTGAAGCCCATTCATAATGCATTCAAGCCTGCTTCTGTAACTTTAAGTCCACCACGAACTCCACCGGCCAATTCAAGACCTGCATCGCCATATACAAGAAGACCAAGTCCACCACGTTCTCCCACCCCTGGATTTTCTAGAACCCTTATCGAAAATTTGAGGAAATCAAATGAGCTTCTGAACCAAGAAATCTCAAAATTACAAAATAAAGTTCGAAGTTTGAAACAGAAGAACGACGTGCAAGATATGGAGATTCAGAAGCTAAAGAAAAATGTTGAGAAAGCAACCTTGTTGACTGGAGAGGAATCTTCTAAGCAGAGTCTAGCTAGGGAATTTATTAAGACCATGAAAGATCAGTTGAAGGATGTGACGCAGAATTTGCCACCAGAGAGTCTAGACAGTGAGACCTTGAGAAATATCCATGCTCAAGCTGAAGATTTTCTAAGGGAAAATACAGAATCTGAAGCATCATCTTCCGTACTTCCAAGCTTGGAGCCTAATCAAGAAATTGGACGTGATACATCAGTTTCAGGTATTGATGGTTCCAAATCGCAAGAACATGAAGTTGAAGAAACTGTAGATTCTACTGGAGCTGAACCATCTCATGATCCAGGAAATTCTCTTCAAGAAAGCAATAGATCATCTATATCTAGTATAGAGGTAGCAACTCCTCCACAAAGCTCAGAAAATGATTCACAATCACCAGACTCAATGAAACTAGGGAGAGAGAAAGAATCACAGGTCATCGAACAATTTGAACCTGGTGTTTATGTGACGCTAGTGGTATGGCCAAGTGGTATAAAGGTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTTGATGCACAACAAGCAGAAGAATGGTGGAATACAAACAAAGATAGGGTGTTTAGAAAGTATAGTTCATCAGCAACAAATTCTTCAGCTTCTGGGTCGTCATCATCTAGAACTAAACCCTTAGCTGAAGAGAACACTTAA 3078 0.4194 MADLASYGNSDRDIEQAVFRRHLRPEKDYLSFSLVYKNGERTLDLICKDKAEAEIWFGGLKALISPGQHTLRSKSNLYDLQDGVDFFPINRPFGATLEFTSSIARGRDSTDSGSRDSPLYWATSDVTSERSNMQLRTSASDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGDVWIDGPSPDTLGSQVALMTDVLVPRPLESNVVLDVQQIASGVRHIALVTRQGEVFSWGEESGGRLGHGIDKDFCHPHLIEFLSVQNVEFIACGEYHTCAISTSGDLFTWGDGAYNAGLLGHGSDVSHWIPKRVTGPLEGLQVLHISCGTWHSALATSNGKLFTFGDGTFGVLGHGDRMSVSYPREVQSLSGLKTIKVACGVWHTAAIVEVMGHQGSNISSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIDYNFHQIACGYTLTVALDTSGLVFTMGSTAYGQLGNPLSDGKTPAKVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDTEDRKSPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGSDQSICSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYSKLKATETGSASTSSRKPTPPRQSIDERERLDRGETRSSRVLMSSITEPVKFLEIWGNKPESKHDFSSLARNPQSISQFKDVAFPNSLKPIHNAFKPASVTLSPPRTPPANSRPASPYTRRPSPPRSPTPGFSRTLIENLRKSNELLNQEISKLQNKVRSLKQKNDVQDMEIQKLKKNVEKATLLTGEESSKQSLAREFIKTMKDQLKDVTQNLPPESLDSETLRNIHAQAEDFLRENTESEASSSVLPSLEPNQEIGRDTSVSGIDGSKSQEHEVEETVDSTGAEPSHDPGNSLQESNRSSISSIEVATPPQSSENDSQSPDSMKLGREKESQVIEQFEPGVYVTLVVWPSGIKVFKRVRFSKRRFDAQQAEEWWNTNKDRVFRKYSSSATNSSASGSSSSRTKPLAEENT 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0022 1025 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 212 222 IPR000408 -
Prci9g0022 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 395 446 IPR000408 -
Prci9g0022 1025 SMART fyve_4 549 618 IPR000306 GO:0046872
Prci9g0022 1025 CDD FYVE_like_SF 561 613 - -
Prci9g0022 1025 Gene3D - 122 387 IPR009091 -
Prci9g0022 1025 FunFam PH, RCC1 and FYVE domains-containing protein 1 138 386 - -
Prci9g0022 1025 Coils Coil 750 791 - -
Prci9g0022 1025 SUPERFAMILY PH domain-like 17 64 - -
Prci9g0022 1025 MobiDBLite consensus disorder prediction 622 655 - -
Prci9g0022 1025 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 27 821 - -
Prci9g0022 1025 SUPERFAMILY FYVE/PHD zinc finger 551 618 IPR011011 -
Prci9g0022 1025 MobiDBLite consensus disorder prediction 634 650 - -
Prci9g0022 1025 MobiDBLite consensus disorder prediction 1001 1025 - -
Prci9g0022 1025 Pfam Transcription factor regulating root and shoot growth via Pin3 946 1000 IPR013591 -
Prci9g0022 1025 MobiDBLite consensus disorder prediction 850 946 - -
Prci9g0022 1025 MobiDBLite consensus disorder prediction 899 935 - -
Prci9g0022 1025 SUPERFAMILY RCC1/BLIP-II 166 552 IPR009091 -
Prci9g0022 1025 PRINTS Chromosome condensation regulator RCC1 signature 228 244 IPR000408 -
Prci9g0022 1025 PRINTS Chromosome condensation regulator RCC1 signature 436 454 IPR000408 -
Prci9g0022 1025 PRINTS Chromosome condensation regulator RCC1 signature 278 294 IPR000408 -
Prci9g0022 1025 PRINTS Chromosome condensation regulator RCC1 signature 319 335 IPR000408 -
Prci9g0022 1025 PRINTS Chromosome condensation regulator RCC1 signature 335 349 IPR000408 -
Prci9g0022 1025 PRINTS Chromosome condensation regulator RCC1 signature 494 515 IPR000408 -
Prci9g0022 1025 Pfam FYVE zinc finger 551 617 IPR000306 GO:0046872
Prci9g0022 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 447 498 IPR000408 -
Prci9g0022 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 333 384 IPR000408 -
Prci9g0022 1025 Pfam Transcription factor BRX N-terminal domain 801 836 IPR027988 -
Prci9g0022 1025 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 555 617 IPR017455 -
Prci9g0022 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 226 277 IPR000408 -
Prci9g0022 1025 ProSiteProfiles PH domain profile. 1 65 IPR001849 -
Prci9g0022 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 397 443 IPR000408 -
Prci9g0022 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 332 381 IPR000408 -
Prci9g0022 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 500 547 IPR000408 -
Prci9g0022 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 277 328 IPR000408 -
Prci9g0022 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 226 274 IPR000408 -
Prci9g0022 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 446 495 IPR000408 -
Prci9g0022 1025 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 551 629 IPR013083 -
Prci9g0022 1025 Gene3D - 388 550 IPR009091 -
Prci9g0022 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 278 332 IPR000408 -
Prci9g0022 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 550 IPR000408 -
Prci9g0022 1025 MobiDBLite consensus disorder prediction 853 882 - -
Prci9g0022 1025 MobiDBLite consensus disorder prediction 883 897 - -
Prci9g0022 1025 MobiDBLite consensus disorder prediction 710 747 - -
Prci9g0022 1025 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 371 381 IPR000408 -
Prci9g0022 1025 Gene3D - 13 72 IPR011993 -
Prci9g0022 1025 ProSiteProfiles BRX domain profile. 946 1001 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0022 Prci-Chr9 900653 909539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0022 949 1009 Major Intrinsic Protein MIP AT1G31880 39.344 9.01e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0022 - - qsa:O6P43_021414 1379