Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0021 ATGGCAGATCTTGCTAGCTATGGGAATTCTGATCGTGATATTGAGCAAATTTGCAAGGACAAAGCTGAGGCAGAGATATGGTTTGGAGGCCTTAAAGCATTAATTTCTCCAGGACAACACACCCTACGATCTAAAAGTAACTTATATGATCTACAGGATGGTGTCGACTTTTTCCCAATTAACCGTCCTTTTGGTGCAACATTAGAGTTTACTTCAAGCATTGCACGTGGCAGGGATTCCACAGATTCAGGATCTCGTGATTCTCCATTGTATTGGGCAACCTCAGATGTGACATCAGAACGTTCAAATATGCAACTAAGGACAAGTGCTTCAGATGGCTTCCGTGTTAGTGTGTCAAGCACACCTAGTTGTTCAAGTGGAGGATCAGGACCAGACGACATAGAGTCATTAGGTGATGTTTATATATGGGGAGATGTTTGGATTGATGGGCCTTCACCTGATACATTGGGAAGTCAAGTTGCTTTGATGACAGATGTGCTGGTTCCTCGGCCATTGGAGTCAAATGTTGTTCTTGATGTTCAACAAATTGCATCTGGTGTGCGTCACATTGCTCTAGTTACAAGGCAGGGAGAGGTTTTTTCTTGGGGTGAGGAATCCGGGGGAAGACTTGGTCATGGGATTGATAAAGACTTCTGCCACCCTCATCTTATTGAGTTCCTCTCTGTTCAAAATGTTGAATTTATTGCATGTGGGGAGTATCATACGTGTGCTATTTCTACGTCTGGTGATCTATTCACCTGGGGAGATGGTGCTTATAATGCTGGGCTTCTTGGTCATGGCAGTGATGTTAGTCACTGGATACCAAAGAGGGTCACTGGCCCTTTAGAAGGGCTTCAAGTTTTACACATTTCTTGCGGTACATGGCATTCTGCATTAGCAACCTCTAATGGGAAATTGTTTACCTTTGGAGATGGAACATTTGGTGTCTTGGGCCATGGAGATCGGATGAGTGTGTCATATCCAAGGGAGGTACAATCATTGAGCGGATTGAAGACTATTAAGGTTGCTTGTGGAGTATGGCACACTGCAGCCATTGTAGAGGTTATGGGTCATCAAGGTTCTAATATTTCATCCAGGAAGCTCTTCACTTGGGGTGATGGTGACAAGTATCGTTTGGGTCATGGAAACAAGGAAACATACCTTCAACCAACTTGTGTCTCTGCACTAATTGATTATAATTTCCACCAGATAGCTTGCGGGTACACTTTGACTGTTGCCCTAGATACATCAGGTCTTGTATTTACTATGGGCAGCACTGCGTATGGTCAGTTAGGAAATCCTTTGTCTGATGGAAAAACACCTGCAAAGGTTCAAGATAAGTTGGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCGCATCATGTTGCTGTCTTGACATCAAGAAGCGAACTATATACTTGGGGGAGGGGAGCGAATGGAAGATTGGGGCATGGGGACACAGAAGACCGAAAATCTCCAACACTGGTTGAAGGTTTAAAAGATAGGCATGTAAAAAATATCTCATGTGGCTCAAATTTTACATCTTGCATATGCATCCATAAATGGGTTTCTGGATCTGATCAATCTATTTGCTCCGGTTGTCGGCAAGCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATAATTGTGGGTTGGTGCATTGCCATGCTTGTAGTTCTAAGAAGGCATTGAGAGCAGCATTGGCTCCCACACCAGGAAAACCACATCGTGTGTGTGATGCTTGTTATAGCAAGCTTAAAGCTACTGAGACTGGTAGTGCTTCCACTTCTAGTAGAAAACCTACTCCTCCTCGTCAATCCATAGATGAGAGGGAAAGATTAGACCGGGGAGAAACAAGGTCTTCAAGAGTTCTCATGTCTTCTATCACTGAGCCAGTAAAATTCCTTGAGATATGGGGCAATAAGCCCGAATCTAAACACGATTTTTCTTCCCTTGCTCGAAATCCACAATCAATTTCACAATTCAAAGATGTTGCATTTCCAAATTCATTGAAGCCCATTCATAATGCATTCAAGCCTGCTTCTGTAACTTTAAGTCCACCACGAACTCCACCGGCCAATTCAAGACCTGCATCGCCATATACAAGAAGACCAAGTCCACCACGTTCTCCCACCCCTGGATTTTCTAGAACCCTTATCGAAAATTTGAGGAAATCAAATGAGCTTCTGAACCAAGAAATCTCAAAATTACAAAATAAAGTTCGAAGTTTGAAACAGAAGAACGACGTGCAAGATATGGAGATTCAGAAGCTAAAGAAAAATGTTGAGAAAGCAACCTTGTTGACTGGAGAGGAATCTTCTAAGCAGAGTCTAGCTAGGGAATTTATTAAGACCATGAAAGATCAGTTGAAGGATGTGACGCAGAATTTGCCACCAGAGAGTCTAGACAGTGAGACCTTGAGAAATATCCATGCTCAAGCTGAAGATTTTCTAAGGGAAAATACAGAATCTGAAGCATCATCTTCCGTACTTCCAAGCTTGGAGCCTAATCAAGAAATTGGACGTGATACATCAGTTTCAGGTATTGATGGTTCCAAATCGCAAGAACATGAAGTTGAAGAAACTGTAGATTCTACTGGAGCTGAACCATCTCATGATCCAGGAAATTCTCTTCAAGAAAGCAATAGATCATCTATATCTAGTATAGAGGTAGCAACTCCTCCACAAAGCTCAGAAAATGATTCACAATCACCAGACTCAATGAAACTAGGGAGAGAGAAAGAATCACAGGTCATCGAACAATTTGAACCTGGTGTTTATGTGACGCTAGTGGTATGGCCAAGTGGTATAAAGGTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTTGATGCACAACAAGCAGAAGAATGGTGGAATACAAACAAAGATAGGGTGTTTAGAAAGTATAGTTCATCAGCAACAAATTCTTCAGCTTCTGGGTCGTCATCATCTAGAACTAAACCCTTAGCTGAAGAGAACACTTAA 2991 0.4203 MADLASYGNSDRDIEQICKDKAEAEIWFGGLKALISPGQHTLRSKSNLYDLQDGVDFFPINRPFGATLEFTSSIARGRDSTDSGSRDSPLYWATSDVTSERSNMQLRTSASDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGDVWIDGPSPDTLGSQVALMTDVLVPRPLESNVVLDVQQIASGVRHIALVTRQGEVFSWGEESGGRLGHGIDKDFCHPHLIEFLSVQNVEFIACGEYHTCAISTSGDLFTWGDGAYNAGLLGHGSDVSHWIPKRVTGPLEGLQVLHISCGTWHSALATSNGKLFTFGDGTFGVLGHGDRMSVSYPREVQSLSGLKTIKVACGVWHTAAIVEVMGHQGSNISSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIDYNFHQIACGYTLTVALDTSGLVFTMGSTAYGQLGNPLSDGKTPAKVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDTEDRKSPTLVEGLKDRHVKNISCGSNFTSCICIHKWVSGSDQSICSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDACYSKLKATETGSASTSSRKPTPPRQSIDERERLDRGETRSSRVLMSSITEPVKFLEIWGNKPESKHDFSSLARNPQSISQFKDVAFPNSLKPIHNAFKPASVTLSPPRTPPANSRPASPYTRRPSPPRSPTPGFSRTLIENLRKSNELLNQEISKLQNKVRSLKQKNDVQDMEIQKLKKNVEKATLLTGEESSKQSLAREFIKTMKDQLKDVTQNLPPESLDSETLRNIHAQAEDFLRENTESEASSSVLPSLEPNQEIGRDTSVSGIDGSKSQEHEVEETVDSTGAEPSHDPGNSLQESNRSSISSIEVATPPQSSENDSQSPDSMKLGREKESQVIEQFEPGVYVTLVVWPSGIKVFKRVRFSKRRFDAQQAEEWWNTNKDRVFRKYSSSATNSSASGSSSSRTKPLAEENT 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0021 996 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 526 588 IPR017455 -
Prci9g0021 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 197 248 IPR000408 -
Prci9g0021 996 MobiDBLite consensus disorder prediction 870 906 - -
Prci9g0021 996 ProSiteProfiles BRX domain profile. 917 972 IPR013591 -
Prci9g0021 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 355 IPR000408 -
Prci9g0021 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 418 469 IPR000408 -
Prci9g0021 996 CDD FYVE_like_SF 532 584 - -
Prci9g0021 996 FunFam PH, RCC1 and FYVE domains-containing protein 1 109 357 - -
Prci9g0021 996 Pfam Transcription factor BRX N-terminal domain 772 807 IPR027988 -
Prci9g0021 996 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 792 - -
Prci9g0021 996 MobiDBLite consensus disorder prediction 821 917 - -
Prci9g0021 996 PRINTS Chromosome condensation regulator RCC1 signature 407 425 IPR000408 -
Prci9g0021 996 PRINTS Chromosome condensation regulator RCC1 signature 465 486 IPR000408 -
Prci9g0021 996 PRINTS Chromosome condensation regulator RCC1 signature 199 215 IPR000408 -
Prci9g0021 996 PRINTS Chromosome condensation regulator RCC1 signature 290 306 IPR000408 -
Prci9g0021 996 PRINTS Chromosome condensation regulator RCC1 signature 249 265 IPR000408 -
Prci9g0021 996 PRINTS Chromosome condensation regulator RCC1 signature 306 320 IPR000408 -
Prci9g0021 996 SUPERFAMILY RCC1/BLIP-II 137 523 IPR009091 -
Prci9g0021 996 Gene3D - 363 521 IPR009091 -
Prci9g0021 996 MobiDBLite consensus disorder prediction 593 626 - -
Prci9g0021 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 470 521 IPR000408 -
Prci9g0021 996 MobiDBLite consensus disorder prediction 972 996 - -
Prci9g0021 996 MobiDBLite consensus disorder prediction 605 621 - -
Prci9g0021 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 303 IPR000408 -
Prci9g0021 996 MobiDBLite consensus disorder prediction 854 868 - -
Prci9g0021 996 Pfam FYVE zinc finger 522 588 IPR000306 GO:0046872
Prci9g0021 996 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 183 193 IPR000408 -
Prci9g0021 996 Pfam Regulator of chromosome condensation (RCC1) repeat 471 518 IPR000408 -
Prci9g0021 996 Pfam Regulator of chromosome condensation (RCC1) repeat 417 466 IPR000408 -
Prci9g0021 996 Pfam Regulator of chromosome condensation (RCC1) repeat 303 352 IPR000408 -
Prci9g0021 996 Pfam Regulator of chromosome condensation (RCC1) repeat 368 414 IPR000408 -
Prci9g0021 996 Pfam Regulator of chromosome condensation (RCC1) repeat 248 299 IPR000408 -
Prci9g0021 996 Pfam Regulator of chromosome condensation (RCC1) repeat 197 245 IPR000408 -
Prci9g0021 996 Pfam Transcription factor regulating root and shoot growth via Pin3 917 971 IPR013591 -
Prci9g0021 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 522 600 IPR013083 -
Prci9g0021 996 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 342 352 IPR000408 -
Prci9g0021 996 Gene3D - 260 361 IPR009091 -
Prci9g0021 996 Gene3D - 95 259 IPR009091 -
Prci9g0021 996 MobiDBLite consensus disorder prediction 824 853 - -
Prci9g0021 996 Coils Coil 721 762 - -
Prci9g0021 996 SUPERFAMILY FYVE/PHD zinc finger 522 589 IPR011011 -
Prci9g0021 996 MobiDBLite consensus disorder prediction 681 718 - -
Prci9g0021 996 SMART fyve_4 520 589 IPR000306 GO:0046872
Prci9g0021 996 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 417 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci9g0021 Prci-Chr9 900653 909539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0021 920 980 Major Intrinsic Protein MIP AT1G31880 39.344 7.89e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0021 - - qsa:O6P43_021414 1337.78