Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci9g0020 ATGGGGCAAGGGCAATCAAAGAGCGAGCTTCTTTACCAGCAAGTCAGTTATGGGAACATCGAAGGATCAAACCTTCATAGGGATGGAGCAGGACTTGAGTGGGTGGACAGAGAAGGAAAGACGCCTTTGATTGTTGCTTGTATGAACCCTGAGCTGTATGATGTCGCCGCAACATTGATTGAACTTGGTGCCAATGTCAATGCATACCGTCCGGGACGACATGCTGGTATGCCATTGCATCATGCAACTAAAAGAGGCCTTGAAAGAATTGTTAAGTTGCTTCTTTTGCAAGGAGCTAATGCATTGGTCATGAATGATGATTGCCAAACTGCTCTGGATGTTGCCAGGGCCAAAGGCCACGGCAATGTTGTTCGTGCTATTGAGAGTCATCTTTGCTTGTTCTCTGGTTGGCTGCGGGAGTTCCATGGACCTGGATTTCTAGAAGTAGTAGCTCCGCAGCTAGTATCTAAGAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCTCGGATTCTTACCGGACCATACAAGCTGGAGCTTGCCATATATTCTAGCATGCAGGATGCACAGCCACGGACAGTTATTGCACTGTGGAAGGCCAACTTAGAAGAACCAAAGCTACACCAGGCAGACCCTTCAGTGACTATTGCTGATCCCACTACAAAAACACGCATTAAACTGGCACCTGCAAGTGAGAATGACAAGCAACAACTTAAGTGGTTTTCAGATGCATGCAAAGGAATTCCACAGGAAAATCCAGCATTTTTGCAGAGTAACATTAGAACAGCTCCTCCCTCAGCACCTCCAGCTGCAGAAGACATAGAGATGGCTGCCGCTGTCAGGGCATCCATGCAGTCTGCCATGCATGAGAGGCCACCCCTTGCAAATGCCCTGCCAAACTTTGGAGCAAGTTCTTCAAGTGGAGTAAATACAACAAACAAGCATGATTCAATTGGCTCACCAAATCCGAAGACAAGTGGTAGTTTGGCCGTAAATGAAGGCAGTCTGGGTAGCAATTCAAGCCAGCCCCTTCATATCAATGACAATGAGCCTGTTCCCCAAAGTTCTAGTGGTTTGGATTTGATTCCATCAGCTCCTCCAATTGCGGATGAGAATCCACTACATGGCCCTATTCATTATCCATCAATTGATTTAACCCCTGTTGAAATATCATCTCCAACTGTAGAGAAACCACCTGAAGAAGGAAACAATGCTGCTGGGAGTGGTTCGTCTTGTGTGATCTGTTTAGATGCTCCAGCCGAGGGGGCTTGCATACCCTGTGGCCATGTTGCCGGATGCATGCCTTGCTTGAATGAGGTCAAAGTAAAGAAATGGGGTTGCCCGGTTTGTCGATCAAAGATTGACCAAATTATAAAGATATATCACGTTTAA 1389 0.4651 MGQGQSKSELLYQQVSYGNIEGSKXLHRDGAGLEWVDREGKTPLIVACMNPELYDVAATLIELGANVNAYRPGRHAGMPLHHATKRGLERIVKLLLLQGANALVMNDDCQTALDVARAKGHGNVVRAIESHLCLFSGWLREFHGPGFLEVVAPQLVSKKVWVVVLPVGSRILTGPYKLELAIYSSMQDAQPRTVIALWKANLEEPKLHQADPSVTIADPTTKTRIKLAPASENDKQQLKWFSDACKGIPQENPAFLQSNIRTAPPSAPPAAEDIEMAAAVRASMQSAMHERPPLANALPNFGASSSSGVNTTNKHDSIGSPNPKTSGSLAVNEGSLGSNSSQPLHINDNEPVPQSSSGLDLIPSAPPIADENPLHGPIHYPSIDLTPVEISSPTVEKPPEEGNNAAGSGSSCVICLDAPAEGACIPCGHVAGCMPCLNEVKVKKWGCPVCRSKIDQIIKIYHV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci9g0020 463 Pfam Ankyrin repeat 79 101 IPR002110 GO:0005515
Prci9g0020 463 Pfam Ankyrin repeat 40 69 IPR002110 GO:0005515
Prci9g0020 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 462 IPR013083 -
Prci9g0020 463 Gene3D - 3 134 IPR036770 -
Prci9g0020 463 Pfam Zinc finger, C3HC4 type (RING finger) 410 457 - -
Prci9g0020 463 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Prci9g0020 463 SMART ANK_2a 75 104 IPR002110 GO:0005515
Prci9g0020 463 SMART ANK_2a 39 69 IPR002110 GO:0005515
Prci9g0020 463 CDD RING-HC_XBAT35-like 408 461 - -
Prci9g0020 463 MobiDBLite consensus disorder prediction 299 361 - -
Prci9g0020 463 SUPERFAMILY RING/U-box 411 457 - -
Prci9g0020 463 SMART ring_2 412 450 IPR001841 -
Prci9g0020 463 ProSiteProfiles Zinc finger RING-type profile. 412 451 IPR001841 -
Prci9g0020 463 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Prci9g0020 463 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Prci9g0020 463 MobiDBLite consensus disorder prediction 259 403 - -
Prci9g0020 463 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Prci9g0020 463 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Prci9g0020 463 PANTHER ROLLING PEBBLES, ISOFORM B 18 247 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci9g0020 402 460 C3H Transcription Factor Family AT3G06140 35.593 1.10e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci9g0020 - - lang:109354249 683.33