Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci96g0001 ATGGACGACTATTGGTGCAGCGATGACGATTACAATTGCTCCGATCAGGGTTCCATTGACGAAGAGTACAACGACGAAGGCTTCAACGACGACGAACTAGACATCGGATCGCCGGTCACAACGTATAATGGTCCCACAGCTCTGGTGATCACAAGAGAATCACTTGTCGCCGTGCAGAAAGAAGATTTGCGCCGAGTAATGGAAATGCTTTCACTGAGAGAGCACCACGCTCGTGTTCTTCTTATTCATCATCGTTGGGATGTTGAGAAGCTTTTTGCAGAGTATGTAGAGAAAGGAAAATCCGCCATGTTCACTGAAGCTGGTGTTACGTGTTATGAATTCGAACCTGGTTCGAATTCTGATCCATCATTTTCTTCTTCATCAGTCTCTTGTGAGATCTGTATAGAGGATGTTCCCATTAATGAAATAACAAGAATGGATTGTGGTCACAGTTTCTGCAATGATTGCTGGACATCTCACTTCATTGTCAAGATAAACGACGGCCAAAGTAAGCACATCAGGTGCATGGCACACAAATGTAACGCAATTTGCGACGAATCTGTCGTGAGAAATCTGCTCTACAAAGAGCATACCGGAACAGCGGAGAAATTCGATCGGTTTCTTATTGAATCTTACATTGAAGACAACAAGAGAGTCAAGTGGTGCCCTAGCGTTCCTCATTGTGGTAACGCAATACGTGTTGATGATCAAGAAGACGAACTATGTGAAGTTGAATGTTGTTGTGGTCTTCAGTTTTGTTTCGGTTGTTCATCGGAGGCTCATTCGCCGTGTTCTTGCTTGATGTGGGAGATATGGTCTAACAAGTGCAAGGACGAGTCAGCAACTGTGAATTGGATCACAGCTCATACAAAGCCTTGCCCTAAATGCAGCAAACCAGTTGAGAAAAATGGTGGCTGCAACTTGGTTAGTTGTGTCTGTGGTCAACCATTTTGTTGGCTTTGTGGTGCGGCCACAGGCCGTGATCATACTTGGTCAACTATAACAGGCCATAGTTGTGGACGCTACCAGCCACAAGAGAAAATAGCTGAACTTGCAAAGCAAAAGCTGTATCGATACATACATTATCATGACAGATACAAAGCTCACACAGACTCATTGAAGCTTGAAAGTAAGTTAAAAGAGACTATGCAAGACAAGGTTGATGTTTTAGAGGAGAGGAATATGAATGATTCTAATGCGCCACTCAGAGATTATAGCTGGGTGGTCAAAGATGGACTCACACGACTCTTTAGATCAAGGCGGGTGCTATGTCATTCGTATCCATTTGCGTATTTTATGTTTGGAGGTGAGATGTTTAATGAGTTGATGTCAGAAGAGGAAAGGGAAATAAAGCAGAACTTGTTTGAAGATCAGCAGCAGCAACTAGAGGCAAATATTGAGAGGCTATCAAAGTTTCTTGAGGAACGGTTTGATCGGTTTGAAAATGACAAAGTTATGGAAATAAGGAATCAAGTCACTAACCTCTCAATTGTTGTTGATAATCTGTGCCAGAAGATGTTTGAGTGTATTGAAAATGATTTGTTGGGTTCTCTTCATCATCATCATCACAGGATTGCTCCTTACAGATCAAAGGGCATAGAGAGAGCATCTAAACTTTCAGCTTGTTCATCATGA 1635 0.4251 MDDYWCSDDDYNCSDQGSIDEEYNDEGFNDDELDIGSPVTTYNGPTALVITRESLVAVQKEDLRRVMEMLSLREHHARVLLIHHRWDVEKLFAEYVEKGKSAMFTEAGVTCYEFEPGSNSDPSFSSSSVSCEICIEDVPINEITRMDCGHSFCNDCWTSHFIVKINDGQSKHIRCMAHKCNAICDESVVRNLLYKEHTGTAEKFDRFLIESYIEDNKRVKWCPSVPHCGNAIRVDDQEDELCEVECCCGLQFCFGCSSEAHSPCSCLMWEIWSNKCKDESATVNWITAHTKPCPKCSKPVEKNGGCNLVSCVCGQPFCWLCGAATGRDHTWSTITGHSCGRYQPQEKIAELAKQKLYRYIHYHDRYKAHTDSLKLESKLKETMQDKVDVLEERNMNDSNAPLRDYSWVVKDGLTRLFRSRRVLCHSYPFAYFMFGGEMFNELMSEEEREIKQNLFEDQQQQLEANIERLSKFLEERFDRFENDKVMEIRNQVTNLSIVVDNLCQKMFECIENDLLGSLHHHHHRIAPYRSKGIERASKLSACSS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci96g0001 544 Gene3D - 262 515 - -
Prci96g0001 544 FunFam RBR-type E3 ubiquitin transferase 125 216 - -
Prci96g0001 544 SUPERFAMILY RING/U-box 127 214 - -
Prci96g0001 544 SMART ibrneu5 202 266 IPR002867 GO:0008270
Prci96g0001 544 SMART ibrneu5 274 339 IPR002867 GO:0008270
Prci96g0001 544 Pfam Ariadne domain 345 543 IPR045840 -
Prci96g0001 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 217 IPR013083 -
Prci96g0001 544 SUPERFAMILY RING/U-box 276 331 - -
Prci96g0001 544 ProSiteProfiles Zinc finger RING-type profile. 131 179 IPR001841 -
Prci96g0001 544 CDD Rcat_RBR_ARI1-like 287 340 - -
Prci96g0001 544 Pfam IBR domain, a half RING-finger domain 202 266 IPR002867 GO:0008270
Prci96g0001 544 FunFam RBR-type E3 ubiquitin transferase 262 515 - -
Prci96g0001 544 Coils Coil 373 393 - -
Prci96g0001 544 ProSiteProfiles TRIAD supradomain profile. 127 343 IPR044066 -
Prci96g0001 544 SUPERFAMILY RING/U-box 202 272 - -
Prci96g0001 544 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 409 IPR031127 GO:0004842|GO:0016567
Prci96g0001 544 CDD RING-HC_RBR_TRIAD1 131 182 - -
Prci96g0001 544 CDD BRcat_RBR_ANKIB1 209 275 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci96g0001 67 537 ARIADNE family AT2G16090 68.856 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci96g0001 K11968 - pcin:129295375 1139.79