Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci931g0001 ATGCACAGAGGAGACCGCCTTGGAAGCTCTCACTATCGTCACTCCCGGGGTCCCTCATGGTCGTCCGATGATCCCTTGACCTATGGAAACCCCAGCCGTGGCCCATCTAACTTCCGCTCCGCCGGAGCCGAAGGTCACTATCGTTCTCTGGACAGTCCGCCAAGTCGGTCTCCTGGCAGAGGCGGTAGGTTCCGGCCACTTTATGGTCCTAGTGGTTTCGGGTTTGATAGTCATCCTGTGCCACCGCATTCTGGGCAGAAACGAGGCTTTCCTTTTTCTGGGCGTGGAGGGTCGCCAGATCGTTTTGATGGTAGAAGTTTTGCAAAACTTTATGTTGGATCTGTACCCCGGACTGCTACTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGAAATGTGCTTGAGGTTGCTTTGATTAAAGATAGAAAAGCTGGGCAACAACAAGGTTATTGCTTCATTAAGTATGCTACTTCAGAAGAAGCTGATCAGGCAATTAGAGCGTTGCACAAACAACATACTCTTCCTGGAGGTGTATGTCCAATCCAAGTGAGATATGCTGATGCTGAACAGGAACGTCTTGGTGCAACTGAGTACAAATTATTTGTGGGCTCTTTGAACAAACAAGCTACGGTAGAGGAAGTTGAGGAAATTTTCTCAAAATATGGCCAGGTGGAAGATGTGTGTCTCCTGCGTGATGAGAAGAAGCAAAGCCGTGGACGCTGTTTTGTTAAATACTCTCATAGGGATATGGCACTGGCAGCTATAAATGCTCTTAACGGAATTTATACAATGAAAGGTTGTGATCAACCATTAACTGTCCGGTTTGCTGATCCAAAGAGACCTCGGCAAGGAGACTCAAGGGGTCCTGCTTTTCCCCGTCCAGGACTTGGTCCTAGATTTGAAGCACCAGACTCAGGTCCTCCATCATATGTTAATGAACCTAAGTTGATGCTGGCG 960 0.4802 MHRGDRLGSSHYRHSRGPSWSSDDPLTYGNPSRGPSNFRSAGAEGHYRSLDSPPSRSPGRGGRFRPLYGPSGFGFDSHPVPPHSGQKRGFPFSGRGGSPDRFDGRSFAKLYVGSVPRTATEEDIRPLFEEHGNVLEVALIKDRKAGQQQGYCFIKYATSEEADQAIRALHKQHTLPGGVCPIQVRYADAEQERLGATEYKLFVGSLNKQATVEEVEEIFSKYGQVEDVCLLRDEKKQSRGRCFVKYSHRDMALAAINALNGIYTMKGCDQPLTVRFADPKRPRQGDSRGPAFPRPGLGPRFEAPDSGPPSYVNEPKLMLA 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci931g0001 320 SMART rrm1_1 200 275 IPR000504 GO:0003723
Prci931g0001 320 SMART rrm1_1 109 185 IPR000504 GO:0003723
Prci931g0001 320 Gene3D - 195 287 IPR012677 -
Prci931g0001 320 MobiDBLite consensus disorder prediction 1 98 - -
Prci931g0001 320 Gene3D - 103 194 IPR012677 -
Prci931g0001 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 279 IPR000504 GO:0003723
Prci931g0001 320 FunFam Flowering time control protein FCA 195 285 - -
Prci931g0001 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 173 IPR000504 GO:0003723
Prci931g0001 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 267 IPR000504 GO:0003723
Prci931g0001 320 MobiDBLite consensus disorder prediction 14 37 - -
Prci931g0001 320 FunFam flowering time control protein FCA isoform X2 102 194 - -
Prci931g0001 320 SUPERFAMILY RNA-binding domain, RBD 68 187 IPR035979 GO:0003676
Prci931g0001 320 PANTHER RNA BINDING PROTEIN 47 284 - -
Prci931g0001 320 MobiDBLite consensus disorder prediction 276 320 - -
Prci931g0001 320 SUPERFAMILY RNA-binding domain, RBD 191 298 IPR035979 GO:0003676
Prci931g0001 320 PRINTS Paraneoplastic encephalomyelitis antigen family signature 260 277 IPR002343 GO:0003723|GO:1990904
Prci931g0001 320 PRINTS Paraneoplastic encephalomyelitis antigen family signature 219 231 IPR002343 GO:0003723|GO:1990904
Prci931g0001 320 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Prci931g0001 320 PRINTS Paraneoplastic encephalomyelitis antigen family signature 204 219 IPR002343 GO:0003723|GO:1990904
Prci931g0001 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 189 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci931g0001 106 285 Eukaryotic Initiation Factors Gene Family AT1G71770 27.551 5.49e-15 73.9