Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2467 ATGGGTGTGTCATCTGGGTCCAACATCAACCAGCAATCTTCTTCTAAAATGCTGCCTCCACGTCAGCAATCTCGTGTTGGAGGACCGCAAACTTCACTGTCCCTAGTTTCTTCTGATCCTCATCTCTCTCCTGAGGAACCTAGATCAAACTCTGACAACATCCGAGAATCTCCTACTGAAAGTGCCAGTTCGCGAGAAACTTGGCCCACTGCTGAAGCTATTGCAGGAAAGAAGATGGATAATGGGAAGGCTGAGAATGATTGCCCTGAGCAGTCAGTCATCCGTTGCGTTTCTAGTGCTGACAAAATTACTCTCCAGGACATAGGAAGAGAAAGGGTTGACATAATCTCTGAAAAGATGCACCATCTACCTGAAGAATTTTTAGAAGAACTGAAGAACAGTCTTCGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGAATTTTTCACTTTGCAGAGGCTTGTTCAAAGTAGAACTGATTTAACAGGCAAGACTTTGATCAGAGCACATCGTGTGCAGCTTGAAATCCTTGTTGCTATTAATACTGGAATTCAGGCATTTTTGCATCCCAACATCAGTCTCTCGCAAACTTCCCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAATATAGCTTGTCAAAACCAGCTTCCTGCTGATGACTGTACCTGTGAAATATGCACCGGCAGAAATGGTTTCTGCAATCTCTGCATGTGTGTAATCTGCAACAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGATGCGATTTATGCTCTCATTGGACCCATACAGATTGCGCCATTCGTGATCAACTTATTTGCACGGGCCCTTCAGCAAAGAGTGGTGCAGGACCTAGTGAAATGGTTTTCAGGTGCCATGCGTGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTTCAGCATTGTGCTCCATCTTGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTCAAGGTAGTAAAGACCCCAGAGGGAGGAAACTATTCTGGAAGTGCGAGGATCTAAAGGAGAAAATGAAAAGTGGAATAGTGGAACCAAATGCTGCCTGCCGGGTGATATTGATGTTCTTCCACCAAGAGCTTGATGTGGACTCCCCAAAGAGCCTGGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACAGGAGGCATGCAATAGAATTGCTGATGTAGTGCAGGAGGCTATAAGAAAAATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGATGCTTGTGATCGAGAATTAGCAGATAAGGCTAGGGAAGCTGAAGGTCTCAAGATGGAGAGGCAAAAAAAGAAATTACAGATAGAAGAACTGGAGAGAATTGTGAGGCTTAAAACTGCAGAAGCTGACATGTTCCAGCTTAAGGCTAATGAGGCTAAACGAGAGGCTGAAAGGCTCCAGAGAATTGCTCTTGCCAAATCTGATAAATCAGAGGAAGAATATACAAGTAACTACTTGAAACAACGGTTAAGTGAGGCTGAAGCTGAGAAGCAATATCTCTATGAGAAGATTAAATTGCAGGAGAGTTCTCGTGCTTCGCAGAGTAGTAGTGGCGGTGACCCATCTCAGATGCTGATGTATTCCAAAATCCATGATCTGCTTTATAGTGTTCCTCCTAAGACAGATAGTCAGCCTAATGAGCGTCACCCGTTCCGAACAAATCCATGA 1755 0.4427 MGVSSGSNINQQSSSKMLPPRQQSRVGGPQTSLSLVSSDPHLSPEEPRSNSDNIRESPTESASSRETWPTAEAIAGKKMDNGKAENDCPEQSVIRCVSSADKITLQDIGRERVDIISEKMHHLPEEFLEELKNSLRVILEGGNGSQHREEFFTLQRLVQSRTDLTGKTLIRAHRVQLEILVAINTGIQAFLHPNISLSQTSLIEIFVYKRCRNIACQNQLPADDCTCEICTGRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICTGPSAKSGAGPSEMVFRCHACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFQGSKDPRGRKLFWKCEDLKEKMKSGIVEPNAACRVILMFFHQELDVDSPKSLENGESGRMIAPQEACNRIADVVQEAIRKMEMVADEKMRMFKKARLALDACDRELADKAREAEGLKMERQKKKLQIEELERIVRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQSSSGGDPSQMLMYSKIHDLLYSVPPKTDSQPNERHPFRTNP 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2467 584 Pfam PHD - plant homeodomain finger protein 211 334 IPR032881 -
Prci8g2467 584 MobiDBLite consensus disorder prediction 568 584 - -
Prci8g2467 584 MobiDBLite consensus disorder prediction 1 39 - -
Prci8g2467 584 MobiDBLite consensus disorder prediction 54 68 - -
Prci8g2467 584 MobiDBLite consensus disorder prediction 564 584 - -
Prci8g2467 584 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 321 340 IPR004082 -
Prci8g2467 584 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 248 268 IPR004082 -
Prci8g2467 584 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 161 176 IPR004082 -
Prci8g2467 584 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 119 141 IPR004082 -
Prci8g2467 584 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 504 526 IPR004082 -
Prci8g2467 584 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 202 223 IPR004082 -
Prci8g2467 584 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 465 485 IPR004082 -
Prci8g2467 584 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 176 191 IPR004082 -
Prci8g2467 584 Pfam Coiled-coil region of Oberon 430 563 IPR032535 -
Prci8g2467 584 MobiDBLite consensus disorder prediction 1 68 - -
Prci8g2467 584 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 26 565 IPR004082 -
Prci8g2467 584 PIRSF UCP025218 3 570 - -
Prci8g2467 584 SMART PHD_3 241 301 IPR001965 -
Prci8g2467 584 Coils Coil 436 505 - -
Prci8g2467 584 CDD PHD_OBE1_like 241 300 IPR047578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2467 Prci-Chr8 34746131 34750410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2467 211 313 PHD Gene Family AT5G57380 31.731 1.67e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2467 - - gmx:100795450 1011.91