Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2466 ATGCTGCCTCCACGTCAGCAATCTCGTGTTGGAGGACCGCAAACTTCACTGTCCCTAGTTTCTTCTGATCCTCATCTCTCTCCTGAGGAACCTAGATCAAACTCTGACAACATCCGAGAATCTCCTACTGAAAGTGCCAGTTCGCGAGAAACTTGGCCCACTGCTGAAGCTATTGCAGGAAAGAAGATGGATAATGGGAAGGCTGAGAATGATTGCCCTGAGCAGTCAGTCATCCGTTGCGTTTCTAGTGCTGACAAAATTACTCTCCAGGACATAGGAAGAGAAAGGGTTGACATAATCTCTGAAAAGATGCACCATCTACCTGAAGAATTTTTAGAAGAACTGAAGAACAGTCTTCGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGAATTTTTCACTTTGCAGAGGCTTGTTCAAAGTAGAACTGATTTAACAGGCAAGACTTTGATCAGAGCACATCGTGTGCAGCTTGAAATCCTTGTTGCTATTAATACTGGAATTCAGGCATTTTTGCATCCCAACATCAGTCTCTCGCAAACTTCCCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAATATAGCTTGTCAAAACCAGCTTCCTGCTGATGACTGTACCTGTGAAATATGCACCGGCAGAAATGGTTTCTGCAATCTCTGCATGTGTGTAATCTGCAACAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGATGCGATTTATGCTCTCATTGGACCCATACAGATTGCGCCATTCGTGATCAACTTATTTGCACGGGCCCTTCAGCAAAGAGTGGTGCAGGACCTAGTGAAATGGTTTTCAGGTGCCATGCGTGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTTCAGCATTGTGCTCCATCTTGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTCAAGGTAGTAAAGACCCCAGAGGGAGGAAACTATTCTGGAAGTGCGAGGATCTAAAGGAGAAAATGAAAAGTGGAATAGTGGAACCAAATGCTGCCTGCCGGGTGATATTGATGTTCTTCCACCAAGAGCTTGATGTGGACTCCCCAAAGAGCCTGGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACAGGAGGCATGCAATAGAATTGCTGATGTAGTGCAGGAGGCTATAAGAAAAATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGATGCTTGTGATCGAGAATTAGCAGATAAGGCTAGGGAAGCTGAAGGTCTCAAGATGGAGAGGCAAAAAAAGAAATTACAGATAGAAGAACTGGAGAGAATTGTGAGGCTTAAAACTGCAGAAGCTGACATGTTCCAGCTTAAGGCTAATGAGGCTAAACGAGAGGCTGAAAGGCTCCAGAGAATTGCTCTTGCCAAATCTGATAAATCAGAGGAAGAATATACAAGTAACTACTTGAAACAACGGTTAAGTGAGGCTGAAGCTGAGAAGCAATATCTCTATGAGAAGATTAAATTGCAGGAGAGTTCTCGTGCTTCGCAGAGTAGTAGTGGCGGTGACCCATCTCAGATGCTGATGTATTCCAAAATCCATGATCTGCTTTATAGTGTTCCTCCTAAGACAGATAGTCAGCCTAATGAGCGTCACCCGTTCCGAACAAATCCATGA 1707 0.4429 MLPPRQQSRVGGPQTSLSLVSSDPHLSPEEPRSNSDNIRESPTESASSRETWPTAEAIAGKKMDNGKAENDCPEQSVIRCVSSADKITLQDIGRERVDIISEKMHHLPEEFLEELKNSLRVILEGGNGSQHREEFFTLQRLVQSRTDLTGKTLIRAHRVQLEILVAINTGIQAFLHPNISLSQTSLIEIFVYKRCRNIACQNQLPADDCTCEICTGRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICTGPSAKSGAGPSEMVFRCHACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFQGSKDPRGRKLFWKCEDLKEKMKSGIVEPNAACRVILMFFHQELDVDSPKSLENGESGRMIAPQEACNRIADVVQEAIRKMEMVADEKMRMFKKARLALDACDRELADKAREAEGLKMERQKKKLQIEELERIVRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQSSSGGDPSQMLMYSKIHDLLYSVPPKTDSQPNERHPFRTNP 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2466 568 MobiDBLite consensus disorder prediction 1 52 - -
Prci8g2466 568 MobiDBLite consensus disorder prediction 552 568 - -
Prci8g2466 568 SMART PHD_3 225 285 IPR001965 -
Prci8g2466 568 MobiDBLite consensus disorder prediction 38 52 - -
Prci8g2466 568 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Prci8g2466 568 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 27 549 IPR004082 -
Prci8g2466 568 MobiDBLite consensus disorder prediction 548 568 - -
Prci8g2466 568 Pfam Coiled-coil region of Oberon 414 547 IPR032535 -
Prci8g2466 568 MobiDBLite consensus disorder prediction 1 23 - -
Prci8g2466 568 Coils Coil 420 489 - -
Prci8g2466 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Prci8g2466 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 488 510 IPR004082 -
Prci8g2466 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Prci8g2466 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 449 469 IPR004082 -
Prci8g2466 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Prci8g2466 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Prci8g2466 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Prci8g2466 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Prci8g2466 568 PIRSF UCP025218 1 554 - -
Prci8g2466 568 CDD PHD_OBE1_like 225 284 IPR047578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2466 Prci-Chr8 34746131 34750410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2466 195 297 PHD Gene Family AT5G57380 31.731 1.76e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2466 - - gmx:100795450 1011.91