Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2464 ATGTCTGTGAATCGGAAGCTCTCTGGGTTAAATGGCAGGATGCCACCGAGTTCCAAGTCGGGCAAGTCAAATGAAGCCTTGCATGAGTCTAATTCTTCGCTCAGGAAATGCAAGAAGAAGAAGCCCTTTTTCGTGTGGGTTTTTCTTGGTGTTGTTGCGGTGGGAATTGTGTGGTTCTTCTTCGTCAGTTCTCACAGTGACTCATGGATGTTGAGGAAGGACAAAAGGCTGGGTGATTGTGAAGAGAGAGCTCGAATCTTGCTACAACGTCACAATATCAGCAAAAAGCAACTTCGTGCTTTCGTTTCCTTGTTCTCTGCATCAGATCAGTCTATAATGCAGATGTTATCCCAATGTATTGGCGAAAGAAGAGTACAAAAGCTGTTAAGCAGTGACCTTGGCAGTACTCTGCAGATGGTATTTTCAGAGAATAAGGAGTTTCAAAAGGAGCATACAAGTGTCCCAGGCCAAGTTGAACTTATAGAACAATGCCCAGTTCTCAATGATTCTGTTCAGACAAACCTGAAATCATTACTGCTAGTGGAAAAAACTGTATCATTGGCCTCATACTCTGCTATCATGTCCAATTTGATCAATAATTTGTTTCTTGGAAAGGACATTGTGCAGTCATGGGTATTGGAGTTAGCTGCAATTCAAGGTTATCTGACTTTGTCTATAGGATGCTCGTGGATTCTTGTTGGAATTACAATTTGTTGCAGATTGGCTGGCTTTCCTTTATTTTGGAATCAGGAGCTGGTTTCACAGCCCAAAGCATTGCAACATTCTGCTGGGCAAAATTCAAAGGGTGCTGGGAGGTGGAGGAAAAAGTTTTTAGTTACATTTGTGTTACTTGGAATAGTTGTGTCCATTTGGTTGTTCTGGCACCTGAATAACGATATTATGCTGAGGAGAGAAGAAATGCTTATTAATATGTGTGATGAGCGAGCTCGCATGCTGCAGGATCAGTTCAATGTGAGCATGAACCACGTTCACGCTTTGGCTATTCTTGTGTCCACCTTTCACCATAGTAAACATCCATCTGCTATTGATCAGAAAACTTTTGGTGAATATACGGAGAGAACAGCATTTGAGAGGCCACTAACAAGTGGTGTTGCTTATGCTATGAAAGTTCTCCACTCTGATAGGGAGCATTTTGAAAAGCAGCATGGGTGGACAATTAAGAAAATGGAAACTGAGAATGAAACACTTGTCCAAGATTGTATTCCGGAAAATCTCAATCCTGCCCCCATTCAAGATGAATATGCTCCTGTGATATTTGCTCAAGAAACTGTTTCCCATATTGTATCGATTGACATGATGTCTGGAAAGGAAGACCGTGAGAATATCTTGCGAGCAAGAGCAACTGGAAAGGGAGTTCTAACATCTCCTTTCAAACTACTGAAGTCCAATCACCTGGGTGTTGTCCTTACATTTGCTGTCTACAATGCTAATTTTCCTCCTAATGCTACACCAGAGCAACGCATTGAAGCTACTGTTGGGTACTTGGGTGCTTCCTATGACGTTCCATCACTGGTGGACAAGCTCCTGCATCAACTTGCCAGCAAACAAACCATTGTTGTAAATGTTTATGATACAACAAATGCATTTGTGCCTATCACAATGTATGGTACTGATGTTGTTGATACTGGGTTACTACATATAAGCAACCTGGATTTTGGGGATCCTATGCGAAAACATGAGATGCATTGCAGGTTCAAACACAAGCCTCCATTACCTTGGACAGCAATCAATGCATCAGTTGGTGTACTTGTTATTACTTTGCTTCTTGGTCACATTTTTTATGCAGCAATCAGTCGAATAGCAAAAGTGGAGGATGACTATCGTCAAATGAGGGAGCTCAAGTTTCGAGCTGAAGCTGCAGATGTAGCAAAATCTCAGTTTCTGGCAACAGTTTCACATGAGATTAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGAACTAGATGAAAGCCAGATGGATTATGCTCAGACTGCTCACATGAGTGGTAAGGATCTCATATCAGTGATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCAGGAAAGCTTGAACTTGAAGCTGTAGAACTTGATCCACGTTCTATTCTAGATGAGGTTCTTTCACTTTTCTCTGGAAAATCTAATGAAAAAGGAATTGAGTTGGCTGCTTATGTATCCAACCAGGTGCCAGAAGTTGTCATTGGTGATCCTAAACGATTCCGGCAAATAATAACTAATCTTGTTGGGAATTCACTTAAGTTCACTCATGATAAAGGACATGTATTTGTATCGGTTCATCTGGCAAATGAAGTAAAGAGCCCACCTCACATTATGGATGTAGTTCTGAGTCAAGGGTTCCAGGACATGTCAGACAGAACCTATAATACATTGAGTGGGTTTCCTGTTGTTAATAGATGGAAAAGCTGGGCAAATTTCAAAAAGTTAAGCAGTATGAATCTGATGAATGACCCTGGAGTGATTCAATTACTAGTGACAGTCGAGGATACAGGTATAGGAATTCCTTTGGATGCACAAAACCGCATATTCACCCCTTTTATGCAAGCTGATAGTTCCACCTCACGAACATATGGTGGGACTGGCATAGGACTGAGCATTAGTAAATGCTTAGTAGACCTTATGAGAGGAGAAATTGGATTTGTCAGCGAACCTGGAATTGGCAGTGCGTTTTCTTTTAGTGCAACTTTCAGGGCACCAAAAGCCTCATCTGTGGATACAAAGCGGCAGCAGTGCAACCCTTTTGTTTCAAAATTTCAAGGTTTGAGAGCACTTGTGGTGGATAGAAGAAAAATCCGTGCTGAAGTTACTAGATATTATCTGCGGAGGATTTGGGTGTCTGTGGATATTGCTTATAGTCTTAACTCAGCACGCTCTTATCTATCCGGTTCTTCCAACAAGAGTAATTCTCAACAGTGGGAAATGATTCTGATAGACAAGGATGTTTTGGATAAAGAAAGTAGTCTATTGTATGTCATCGAGAAACAGAGGAAGAATGACGTCAAAAGAGACCCGAAAAGTTTTCCCAAGATTTTTCTCTTGGCAAACAACCTTAGTACTGATGAACGTGGCAAGCTAAAATCTGTTGGTGTTGTAGATGATATACTAATGAAACCTCTTTGGTTTAGTTCTTTGATTTCCTACTACAGAAGGAAAGAACCAAACCTTGGGAACTTGCTAAGACAGAAACATATTTTGGTGGTTGACGATAATGCAGTGAACAGAAAAGTAGCAGAAGGCATGCTACGAAGATATGGGGCAAAAGTAACTTGTGTGGAGGGTGGCAGGGCTGCTTTGAAGATACTTAAGCCACCGCATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGATTTGAAGTGACCAGACAAATCCGCTGTCTGGAGAGGGAGTTCAATGACAAAATTGCACATGGTGAAGCATCAACTGAGATGTTTGGTAATGTGGCTCCTTGGCACATGCCAATATTGGCCATGACAGCTGATGCAACTCAAGCTTCAATTGAAGAGTGCAATAGGTGTGGGATGGATGATTATGTGTCAAAGCCATTCGAAGAAGATCAGCTCTATGAGGCAGTGGCACGTTGCTTTCGGTCTGGTTGA 3651 0.4152 MSVNRKLSGLNGRMPPSSKSGKSNEALHESNSSLRKCKKKKPFFVWVFLGVVAVGIVWFFFVSSHSDSWMLRKDKRLGDCEERARILLQRHNISKKQLRAFVSLFSASDQSIMQMLSQCIGERRVQKLLSSDLGSTLQMVFSENKEFQKEHTSVPGQVELIEQCPVLNDSVQTNLKSLLLVEKTVSLASYSAIMSNLINNLFLGKDIVQSWVLELAAIQGYLTLSIGCSWILVGITICCRLAGFPLFWNQELVSQPKALQHSAGQNSKGAGRWRKKFLVTFVLLGIVVSIWLFWHLNNDIMLRREEMLINMCDERARMLQDQFNVSMNHVHALAILVSTFHHSKHPSAIDQKTFGEYTERTAFERPLTSGVAYAMKVLHSDREHFEKQHGWTIKKMETENETLVQDCIPENLNPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARATGKGVLTSPFKLLKSNHLGVVLTFAVYNANFPPNATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNAFVPITMYGTDVVDTGLLHISNLDFGDPMRKHEMHCRFKHKPPLPWTAINASVGVLVITLLLGHIFYAAISRIAKVEDDYRQMRELKFRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDESQMDYAQTAHMSGKDLISVINEVLDQAKIEAGKLELEAVELDPRSILDEVLSLFSGKSNEKGIELAAYVSNQVPEVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSVHLANEVKSPPHIMDVVLSQGFQDMSDRTYNTLSGFPVVNRWKSWANFKKLSSMNLMNDPGVIQLLVTVEDTGIGIPLDAQNRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMRGEIGFVSEPGIGSAFSFSATFRAPKASSVDTKRQQCNPFVSKFQGLRALVVDRRKIRAEVTRYYLRRIWVSVDIAYSLNSARSYLSGSSNKSNSQQWEMILIDKDVLDKESSLLYVIEKQRKNDVKRDPKSFPKIFLLANNLSTDERGKLKSVGVVDDILMKPLWFSSLISYYRRKEPNLGNLLRQKHILVVDDNAVNRKVAEGMLRRYGAKVTCVEGGRAALKILKPPHNFDACFMDLQMPEMDGFEVTRQIRCLEREFNDKIAHGEASTEMFGNVAPWHMPILAMTADATQASIEECNRCGMDDYVSKPFEEDQLYEAVARCFRSG 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2464 1216 Gene3D CHASE domain 349 576 IPR042240 -
Prci8g2464 1216 CDD HisKA 630 691 IPR003661 GO:0000155|GO:0007165
Prci8g2464 1216 Gene3D - 296 348 - -
Prci8g2464 1216 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 684 906 IPR036890 -
Prci8g2464 1216 Gene3D - 1074 1216 - -
Prci8g2464 1216 FunFam Histidine kinase 4 602 693 - -
Prci8g2464 1216 Pfam CHASE domain 348 536 IPR006189 -
Prci8g2464 1216 SUPERFAMILY CheY-like 1074 1214 IPR011006 -
Prci8g2464 1216 SMART CHASE_2 345 544 IPR006189 -
Prci8g2464 1216 SMART HKATPase_4 742 915 IPR003594 -
Prci8g2464 1216 PRINTS Bacterial sensor protein C-terminal signature 871 889 IPR004358 GO:0016310|GO:0016772
Prci8g2464 1216 PRINTS Bacterial sensor protein C-terminal signature 836 850 IPR004358 GO:0016310|GO:0016772
Prci8g2464 1216 PRINTS Bacterial sensor protein C-terminal signature 854 864 IPR004358 GO:0016310|GO:0016772
Prci8g2464 1216 PRINTS Bacterial sensor protein C-terminal signature 895 908 IPR004358 GO:0016310|GO:0016772
Prci8g2464 1216 SMART HisKA_10 630 695 IPR003661 GO:0000155|GO:0007165
Prci8g2464 1216 Gene3D - 602 693 - -
Prci8g2464 1216 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 742 907 IPR003594 -
Prci8g2464 1216 SUPERFAMILY CheY-like 930 1062 IPR011006 -
Prci8g2464 1216 ProSiteProfiles CHASE domain profile. 345 569 IPR006189 -
Prci8g2464 1216 ProSiteProfiles Response regulatory domain profile. 1076 1213 IPR001789 GO:0000160
Prci8g2464 1216 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 616 696 IPR036097 GO:0000155|GO:0007165
Prci8g2464 1216 CDD REC_hyHK_CKI1_RcsC-like 1077 1209 - -
Prci8g2464 1216 ProSiteProfiles Histidine kinase domain profile. 637 911 IPR005467 -
Prci8g2464 1216 Pfam His Kinase A (phospho-acceptor) domain 630 695 IPR003661 GO:0000155|GO:0007165
Prci8g2464 1216 FunFam Histidine kinase 4 349 576 - -
Prci8g2464 1216 Pfam Response regulator receiver domain 1077 1209 IPR001789 GO:0000160
Prci8g2464 1216 MobiDBLite consensus disorder prediction 1 31 - -
Prci8g2464 1216 SMART REC_2 1075 1209 IPR001789 GO:0000160
Prci8g2464 1216 PANTHER TWO-COMPONENT HISTIDINE KINASE 233 1209 - -
Prci8g2464 1216 CDD HATPase_EvgS-ArcB-TorS-like 747 909 - -
Prci8g2464 1216 MobiDBLite consensus disorder prediction 1 30 - -
Prci8g2464 1216 Gene3D - 694 913 IPR036890 -
Prci8g2464 1216 ProSiteProfiles Response regulatory domain profile. 935 1065 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2464 Prci-Chr8 34717781 34729354 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2464 256 1213 Miscellaneous Gene Families AT5G35750 66.735 0.0 1317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Prci8g2464 CHASE 1.2e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2464 K14489 - gmx:100805107 1713.35