Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2458 ATGCACATGGTTTCTTCGGACAAAAGTGCTGATTGCAATGCTTCTTCTGATAAATCGCTTCAAAGGCTGAGTTCTCAAAGTGATATTACTGTGTCACAAGAGACTTGTGATGATAAAAATGACTCATCCAACCCAGAGGGAGCAGGAAGAATTCCTTCTGTTGCAGCTGAGAGAGAGGTGCAAGATTCTGATGCTACTCCTGATGCACTGCAATCAGATCAAGAAGGTAGTGGATGTACTTCACCACTTCAAAGACCTTTGCAGAGTCCTAATACTAATCAGCGTCAATTACAATCTAGTGATGAAAGCCCCTCTATAATATGTGAAAAGAGTTCAAAAGAAAGTGTAGCTGAGAAAGAAGTGTGGGATTTGGATGCTACTTGCAATGCACGGAAATCAGAGCAAAAGAGTATATGCTCTTTACCTCAAGAGAAACCCTTGCAAAACCCTAGTACCATTCCACACACATTACAGTGTGGTCAGGATGGTCTCTCTATAGCACGTGAAAAAGTCTCAAAGGATGGATATAATTGGAGAAAATATGGCCAGAAAAATGTCAAGGGAAATGAATATATAAGGAGCTATTACAAGTGCACACATCCCAACTGCCCTGCAAAGAAGCAATTGGAACAGTCAAATAATGGACAGATTACAGATACCATTTGCATCGGCCAGCATAATCATCCCCAAGTAAACAGTCCACGACCTGCTGAAGAAAAATCAGACAAGCCCTCTCTTCCCATCATGAAAGACAACACATCCATTGAGCATGGATGTGTGCCTCAACAGATCAAGTCTCTAGAAACTCATCCTGTTTCAACAGTTTCCACAATTAATGAGGTCAAAGCTGCACTTTTACAGTCGACTGGAACAAGGGATGTGGTTCTTGCCAATGAGGATCCTGAGTCAAAACGCTTGAAGAAAAACATTAGTAATGTTGATGCCCCTGGGGCTGAGAAGTCAGCTGGTGAATCTCGTCATGTTGTTCAGACTTCAAGTGAGGTTGATTTTATTAATGATGGGTACCGTTGGCGCAAGTATGGGCAGAAACTAGTAAAAGGAAATCCAAATCCAAGAAGTTATTATCGGTGCTCAAGTCCCGGATGCCCTGTCAAAAAGCACGTGGAAAGGGCCTCTCATGATAAAAAAATTGTGATAACCACCTATGAGGGGCATCATGATCATGAAAGCCCCTCTGGAAGGACTGTTAGTCATGACGGAGCAGCAAACACATCCACAACAATCATCAACAGTGATTCAGGAACCAAATCTGGGGAAAACTCTGTTTTTGTTGATCCAGCAGAACAACAGACTTGCTTGGACCTAGAAAGCAGATCACAGAAGCGACCAAATGGTGAGCAAATTGCAAAGCCAAAGTCTTGTGATATGGTTGAATCTGAAGGGATTGCTACTCAAGCTTCTGAAAGTCCTTGGAGTGAGAAAGAACAAAAGGGCGACACGGGTGCTGGAAATGATTCAGGCGGCCTTGGCACCACATGCCATCGAGGTTCTGAGCCTCCATGTAGATTAAATAAACAGCAGACGGATGAGGTAAGAACCATATCAGAAGAAAGTAAGTTAAACAAGCAATCTGAACCTGATGCAGAACCAGTTCAAAGCTAA 1623 0.4276 MHMVSSDKSADCNASSDKSLQRLSSQSDITVSQETCDDKNDSSNPEGAGRIPSVAAEREVQDSDATPDALQSDQEGSGCTSPLQRPLQSPNTNQRQLQSSDESPSIICEKSSKESVAEKEVWDLDATCNARKSEQKSICSLPQEKPLQNPSTIPHTLQCGQDGLSIAREKVSKDGYNWRKYGQKNVKGNEYIRSYYKCTHPNCPAKKQLEQSNNGQITDTICIGQHNHPQVNSPRPAEEKSDKPSLPIMKDNTSIEHGCVPQQIKSLETHPVSTVSTINEVKAALLQSTGTRDVVLANEDPESKRLKKNISNVDAPGAEKSAGESRHVVQTSSEVDFINDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDKKIVITTYEGHHDHESPSGRTVSHDGAANTSTTIINSDSGTKSGENSVFVDPAEQQTCLDLESRSQKRPNGEQIAKPKSCDMVESEGIATQASESPWSEKEQKGDTGAGNDSGGLGTTCHRGSEPPCRLNKQQTDEVRTISEESKLNKQSEPDAEPVQS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2458 540 SUPERFAMILY WRKY DNA-binding domain 330 398 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci8g2458 540 SMART WRKY_cls 338 397 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci8g2458 540 SMART WRKY_cls 172 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci8g2458 540 MobiDBLite consensus disorder prediction 441 540 - -
Prci8g2458 540 ProSiteProfiles WRKY domain profile. 167 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci8g2458 540 MobiDBLite consensus disorder prediction 389 428 - -
Prci8g2458 540 MobiDBLite consensus disorder prediction 65 110 - -
Prci8g2458 540 Gene3D WRKY domain 325 391 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci8g2458 540 Pfam WRKY DNA -binding domain 173 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci8g2458 540 Pfam WRKY DNA -binding domain 339 396 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci8g2458 540 Gene3D WRKY domain 165 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci8g2458 540 MobiDBLite consensus disorder prediction 1 115 - -
Prci8g2458 540 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 104 416 IPR044810 GO:0003700
Prci8g2458 540 FunFam WRKY transcription factor 57 324 398 - -
Prci8g2458 540 FunFam WRKY transcription factor 162 232 - -
Prci8g2458 540 MobiDBLite consensus disorder prediction 516 531 - -
Prci8g2458 540 MobiDBLite consensus disorder prediction 1 38 - -
Prci8g2458 540 MobiDBLite consensus disorder prediction 403 428 - -
Prci8g2458 540 SUPERFAMILY WRKY DNA-binding domain 169 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci8g2458 540 ProSiteProfiles WRKY domain profile. 333 398 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci8g2458 540 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2458 Prci-Chr8 34667584 34677642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2458 112 411 WRKY Transcription Factor Family AT2G04880 45.912 5.33e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Prci8g2458 WRKY 2.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2458 K18834 - gmx:100781219 451.825