Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2392 ATGGAACGCACCAATGCCATGGATGGAGCTCCTGGGATTTCAAAATCGAATGTCAAGAATTCGAATTTCACCTTCAACACTCCTTCAGCTTCATCTTCGCGCCCGGTTTCGGGCCTGTCTAGGCCGAGATTGATGAAGGTTCGAAAGCAGAATAATGCTCAGAGTTTGAGGTCGACGACAGGGATCGGGGAGAATCTGCTTGCTTCTGGTTTCAATCCTTTTGCTTCTGATGACGATAACTTGGTTCGACCCTTTTCTGGGTCGGGGATGGCTTCGTCGTCTATATTCAGTGAAATTGATGCTGTTCAGACTGGAAATGAGCCATTTGTCTTTGGAGCAAAGACGGTTGATTCGGGTTCGAATTTAAATAAGAACAACATGGGTTCTGGTTTGAATTTCGATCAAGGAATTGTTGATCAAATGAAAAATCTGAAAATGAGCAATGTGAATAGTGTTTCAAACTTTAAAGATGGGGGTTATAAGAAGGGCGAGTATTCATTTCAGAGCGGTCATAAGAAGAGTTCCAGTCATGATGGAAGCATGGCATCTACGCTTCCAGAAGATATGAGGAAGTTGAATATTGGTGTTGGTGGATTTGAAGACATTGACAAAGCCAAAAGCAGGTGTTTAAATTCATATACAGATAATTTGTCTAAATTCAAATTCCGAAGCATATCCAACCCAAGCGTTTCTTCCAGTGTTGAAATAGAACTCCAATGTGAGTTAAACAAGAAATTGAGTATTATAGATAGTTGTTCTGGTGGTCTACATATTGATAAGTCAACAAACGAAGTTCTCGACCGTATGAAGAATCTAAATGTAAAGGATTCTTCAGGTTTTGATAGTGTTAAGAAGAATGAAGTTGACGCAACGACTGGTGGCAAAAAAAAGTCTACGTCTGCAAGCAGTAAAACAACAACTAGTTATATTGGGGGAAGAAAAGAGGCCAGTCTGTTGAGAGAAATGGAGAAGTTAAAGTTGTTAAGTGAGAAGGGGGACTTCACTAGACCAAAATTTTGGAATCCTTCCTCTCAGGTACATGTGGGGGAAATTAATCAAACAGATGCAAGTGGTGGTCAGGTAGACAAACCCAAGGAAGGCAACAGAATGACACAAAATGCCACGTCGTCATCATCATTCTTATCTGGAGGCATTAATTTTCCCATGGTTGGAAATGATTCTGGAGTTACTAGGACAGATGAATTTGTCTTTACAGGGATCAAAGATAATTCAAACTCATCTTTTGTTGAGTTCAAAACACCTGCATTAAGGAACGAACAAAGTTGCTACACAAGAGTGAAGAAAAGGAGAGGTAAACTGAAGCTGTCTACCCCTGTCCAGCTGTTTCATGGACAAGATTTTGTTTCAAAGGAGAATGTTACCGAAGGAAACCCTGAGGCTTCTGAGGCTTATTCACCAATGGAAGTGTCTCCATATCAGGAAACGTTGGCTGAAACTCGGTGGTCAAGGGAGAACTCTGTGACGTCCAATGAGTCATCGAGTCTTGATACCAACTCCGTAGTGCAGACAACTGCTCATGATCCTATTGATGAAGATGTAATAATGAAAACAGAACTCTTTATTGCTGAATGTGATGCTGCATGCAATGAAACAAAGGAGAAAGCTTCAGAGTATCACATTCCTAAAAATATTTTCAATGAAGATCCACAAGATGGGTCCGCATCTGGGGTGGAAACTGAAAGCTTTAAGTCTGCAAATGATGACGTGGACATAATCAGTGATGCAGCTAACACATCAGTAGATGTTGCAAGCAGTCCAAGCTCAAGTGTTGAAGCCTGTGGTGGTGATAGTATTCCACATCTCAGTCGTGCTTCAAGTTCCAATGATATAACTGGGTTCCCCTTCACATTTTCTGCCTCTTACTCCTCTGAGGTTCAATCATCTAGCCCTAAGCGCCACCTCAAAAAGAAAAGTTGGGTAAAAGTTGGTTATGATGCTCACAGCTCCACTCCAAACTTGAAAATTTCCTATTCATCACCATCAAAGTCCTTTTCTTCTTGTTCCAAAACATCATCTCTTTTCACATCTGGGCAAGCTCAAAAAGACAAAGTATCAACTCCTCAACCTAAAACATGGGATTCTGAGATTAGTAAGGAGCAGGGGATGAAAGAGGAGCCTGCTTCTAATACTGCTGCAAGCATTGCTGCTCAGGAAGCTTGTGAAAAGTGGCGACTCAGGGGAAACCAAGCCTATAAAAATGGGGATCTATCTATGGCAGAGGATTGTTACACTAAAGGACTTCAATGTGTTTCTAAAGAAGCAACATCCAGGAGCTCCATGAGAGCTTTGATGCTTTGTTATAGCAATCGTGCTGCTACGCGCATGTCTCTTGGAAGGATGAGAGATGCACTAAAAGATTGTATACTGGCAGCTGAAATAGATCCAAATTTCCTCAGGGTACAACTTAGAGCTGCGAATTGTTACCTTGCTTTGGGGAAAGTTGAAGATGCATTGCAATATTTCAAGAGGTGCTTGCAAACAGGAGCTGGTGTTTGTGTAGATCGAAAAATTGCTGTGGAAGCTTCTGATGGCTTACAAAAGGCACAGAAAGTATCAGAATTCATCAATCATTCTATTGAACTTTTGCAAAGAAGGACAACGTCTGACATGGATAGGGCATTGGAACAAATTAATGAGGCATTGATGATAAGTTCATACTCTGAAAAATTACTTGAAATGAAAGCAGAAGCTCTTTTCATGTTGTGTAAATTTGAAGAGGTGATTCAGTTGTGTGACCAAACCCTTGGTTCTGCTGAGAAGAATTTTTGTTCATTGGATGCTGATGGAGAAGTCATAAATTTGGATAACTCAAAACTCTCAAAATGCTTCTACTTCAGGCTATGGCGATGCTCAATGAAAATTAAATCCTACTGTCACCTTGGAAAGCTTGAAGAAGGTCTTTGTTCGCTAGAGGAACAAGAAAAAATGGTCTCTTCCATGAACAAGAGTGGAAGCAATTTTTTTGACTCACTGATTCCCCTGGCTGCCATTGTACGTGAACTATTACATCACAAGACTGCAGGGAATGAAGCATTTCAGGCAGGAAGGCATGCAGAAGCTGTTGAGCATTATACAGCAGCTTTGTTATCTAATGTGGAGTCCCGCCCATTTTCAGCTGTCTGCTTTTGTAATCGTGCTGCTGCTTATACAGCACTAGGTCAAATTACTGATGCTATTGCAGATTGCTGTCTAGCTATAGCTCTGGATGAAAATTATTTGAAGGCACTTTCTAGGCGTGCAACTCTGTATGAGATGATCAGAGATTACGCCCAAGCAGCTAGTGATATTCGGAGGCTTGTCTCTATTCTCAATAAGCGGGTGGATGATAAGGCCAATCAGCATGGAATATCTGATAGATCTTATAATTATGCTAATGACTTGAAACAGAATTCTATTCGGCTTTCTGAAATGGAGGAGGAAGCCAGAAAGGAGATCGCTCTTGACATGTACCTCATATTGGGAGTTGAACCATCTGTTTCTACATCTGAAATCAAGAAGGCCTATCGAAAAGCTGCACTTAGGCATCATCCTGACAAGGCTGGCCAATCTTTGGCACGGAGTGACAATGGTGATGATCAGATGTGGAAGGATATTGCTGAAGAAGTACGTCGAGATGCTGATAGGCTTTTCAAAATTATTGGAGAGGCCTATGCAGTATTGTCGGACCCTGCCAAGCGTGCACAATATGATGCTGAAGAAGAAATGAGAAATGCTCGAAAGAAGCGCCATGGTGGTATCATGGCTAGAACTAATGTTGACACCCAATCTTATCCATTTGAGCAAAGCAACATTAGGAGACACTGGAGAGATTTGCGGAGATCGTATGGCGGTTCTTCTTCCAGAGGTTTTGAAACTGGTCAGTCAGGCAGGTACTAA 3897 0.4149 MERTNAMDGAPGISKSNVKNSNFTFNTPSASSSRPVSGLSRPRLMKVRKQNNAQSLRSTTGIGENLLASGFNPFASDDDNLVRPFSGSGMASSSIFSEIDAVQTGNEPFVFGAKTVDSGSNLNKNNMGSGLNFDQGIVDQMKNLKMSNVNSVSNFKDGGYKKGEYSFQSGHKKSSSHDGSMASTLPEDMRKLNIGVGGFEDIDKAKSRCLNSYTDNLSKFKFRSISNPSVSSSVEIELQCELNKKLSIIDSCSGGLHIDKSTNEVLDRMKNLNVKDSSGFDSVKKNEVDATTGGKKKSTSASSKTTTSYIGGRKEASLLREMEKLKLLSEKGDFTRPKFWNPSSQVHVGEINQTDASGGQVDKPKEGNRMTQNATSSSSFLSGGINFPMVGNDSGVTRTDEFVFTGIKDNSNSSFVEFKTPALRNEQSCYTRVKKRRGKLKLSTPVQLFHGQDFVSKENVTEGNPEASEAYSPMEVSPYQETLAETRWSRENSVTSNESSSLDTNSVVQTTAHDPIDEDVIMKTELFIAECDAACNETKEKASEYHIPKNIFNEDPQDGSASGVETESFKSANDDVDIISDAANTSVDVASSPSSSVEACGGDSIPHLSRASSSNDITGFPFTFSASYSSEVQSSSPKRHLKKKSWVKVGYDAHSSTPNLKISYSSPSKSFSSCSKTSSLFTSGQAQKDKVSTPQPKTWDSEISKEQGMKEEPASNTAASIAAQEACEKWRLRGNQAYKNGDLSMAEDCYTKGLQCVSKEATSRSSMRALMLCYSNRAATRMSLGRMRDALKDCILAAEIDPNFLRVQLRAANCYLALGKVEDALQYFKRCLQTGAGVCVDRKIAVEASDGLQKAQKVSEFINHSIELLQRRTTSDMDRALEQINEALMISSYSEKLLEMKAEALFMLCKFEEVIQLCDQTLGSAEKNFCSLDADGEVINLDNSKLSKCFYFRLWRCSMKIKSYCHLGKLEEGLCSLEEQEKMVSSMNKSGSNFFDSLIPLAAIVRELLHHKTAGNEAFQAGRHAEAVEHYTAALLSNVESRPFSAVCFCNRAAAYTALGQITDAIADCCLAIALDENYLKALSRRATLYEMIRDYAQAASDIRRLVSILNKRVDDKANQHGISDRSYNYANDLKQNSIRLSEMEEEARKEIALDMYLILGVEPSVSTSEIKKAYRKAALRHHPDKAGQSLARSDNGDDQMWKDIAEEVRRDADRLFKIIGEAYAVLSDPAKRAQYDAEEEMRNARKKRHGGIMARTNVDTQSYPFEQSNIRRHWRDLRRSYGGSSSRGFETGQSGRY 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2392 1298 PRINTS DnaJ domain signature 1212 1232 IPR001623 -
Prci8g2392 1298 PRINTS DnaJ domain signature 1175 1190 IPR001623 -
Prci8g2392 1298 PRINTS DnaJ domain signature 1157 1175 IPR001623 -
Prci8g2392 1298 Pfam Tetratricopeptide repeat 806 833 IPR019734 GO:0005515
Prci8g2392 1298 SUPERFAMILY TPR-like 728 922 IPR011990 GO:0005515
Prci8g2392 1298 MobiDBLite consensus disorder prediction 166 185 - -
Prci8g2392 1298 Coils Coil 1131 1151 - -
Prci8g2392 1298 ProSitePatterns Nt-dnaJ domain signature. 1217 1236 IPR018253 -
Prci8g2392 1298 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 1288 - -
Prci8g2392 1298 MobiDBLite consensus disorder prediction 277 308 - -
Prci8g2392 1298 SUPERFAMILY TPR-like 1011 1110 IPR011990 GO:0005515
Prci8g2392 1298 SMART dnaj_3 1154 1232 IPR001623 -
Prci8g2392 1298 Pfam DnaJ domain 1155 1237 IPR001623 -
Prci8g2392 1298 Gene3D DnaJ domain 1140 1259 IPR036869 -
Prci8g2392 1298 Gene3D Tetratricopeptide repeat domain 1007 1131 IPR011990 GO:0005515
Prci8g2392 1298 MobiDBLite consensus disorder prediction 293 308 - -
Prci8g2392 1298 MobiDBLite consensus disorder prediction 1 42 - -
Prci8g2392 1298 Gene3D Tetratricopeptide repeat domain 726 993 IPR011990 GO:0005515
Prci8g2392 1298 MobiDBLite consensus disorder prediction 684 702 - -
Prci8g2392 1298 SUPERFAMILY Chaperone J-domain 1111 1236 IPR036869 -
Prci8g2392 1298 ProSiteProfiles dnaJ domain profile. 1155 1240 IPR001623 -
Prci8g2392 1298 MobiDBLite consensus disorder prediction 10 38 - -
Prci8g2392 1298 CDD DnaJ 1155 1229 IPR001623 -
Prci8g2392 1298 MobiDBLite consensus disorder prediction 354 378 - -
Prci8g2392 1298 MobiDBLite consensus disorder prediction 1277 1298 - -
Prci8g2392 1298 MobiDBLite consensus disorder prediction 684 715 - -
Prci8g2392 1298 SMART tpr_5 1008 1041 IPR019734 GO:0005515
Prci8g2392 1298 SMART tpr_5 1080 1113 IPR019734 GO:0005515
Prci8g2392 1298 SMART tpr_5 771 804 IPR019734 GO:0005515
Prci8g2392 1298 SMART tpr_5 805 838 IPR019734 GO:0005515
Prci8g2392 1298 SMART tpr_5 895 928 IPR019734 GO:0005515
Prci8g2392 1298 SMART tpr_5 1046 1079 IPR019734 GO:0005515
Prci8g2392 1298 SMART tpr_5 727 760 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2392 Prci-Chr8 31620779 31635904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2392 1157 1238 C2H2 Transcription Factor Family AT1G74250 34.146 4.86e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2392 K09527 - cave:132163311 1210.67