LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci8g2321	ATGGATTATTCCACATACCAACAACAACAACAACAGGAACAAGGCTATGAATCATCTCAAAATCAAGCCTTTGATCAATCTTCCCAGTCTTATTATGGTTACAATCAACAATATGACCAGCAATATGCATACTATGCTGGCCAAGGTCAAGGAAGTTCATATGCCCACCCACAATTCCAGCAAGAACACACCTCCATTCACCCTCCTGGAGTCCCAATACCTCCTGAACAGGCTCAGATTCAAAATCCACAATTTTCAAACCAAGATTCAGGCGCGGCACTAGGTGCTGCGATGAATCCAGCGGCTGCGGCTGTGGCGATAGCTGCTCTCTCACAGCTCACTCAATTTGCTGGGAACCCTCCGATTGGGCAGTCTCGATACAGAGGCGGCAGCAGGGGCAGTAGACCATTTAGACGGGGTGGTCGTGGCCATTTCAACCCACGAGGTCATGCTCCTTACCGTGGTGGGGGACGTGGCCATGGGGGTGGTAGGCACTTCCCATCTTATTCTTCAGAATTTGTACCAGCTGCTACCGGAGGCACATCGGTGGCACAACAACCTTCATCATCAGTATCTGGGCCTATTCTAGCACAGGTTCCAGATGTGACATTGCATCCACCACCATGTAAATTTTGGTGTGAAATTTGCAAGGTTGAGTGCAATTCTTCTGAGATTATGGAGCAGCATAAGAATGGAAAGCGGCATAAAAAGAATTTGCAGGTACACGAGGAGTTACAGAGGCGTAAAGCTGTAAATGGACAACAGAATAGCCAGATGCCCTCTTCTCAATTGAATTTAACTGCCCAGGTTGAGAAAGCTCCTGAATTGAAGACAGAAGGGTGCCCAGCTGATAATATGATCTCTGTAGTGATGGATGACAATCTTAAAAATGAACTTGATTTGCAGAACAATACAGGAGAAACTTCAGAAGTTACAGCTGATGATCCTGAGGAAAACCCCAGGGAAGGTTCGGCTTCAAGGGGCCATGGTTTCAAGCGAAAGATGAGAGGAGGCAGAGGAGGTAAATACATGAGAAATAATGAGGGGTCAAGAAAGAAAGTGGAACCTCCAAAACCCAAACAGGCTACATCTTTCATATGTGAGTTGTGCAATGTTATATGTGAGTCACAGGTTGTTTATGACAGTCATTTGACCGGGAAAAAGCATCAATCAAATCTCAAACGTGTCCACGGGCACCAAGCCATGTCCCAAGAACCAGGGCCACAGGCAGCTCCCCCAGCTAACATCAGTGCTGTGTCTAATTCCATTGACATCAATGCTCTTGCAAATTCAATTAACTCTCAAGTCCAACATGGTGTTAATGATCCACAAGTCCTCTTGGCTCAGCTCCTAATGACAGTACTTTCTCAAGCTCAAGCGTCAACAGCGGCAGCGGCAACCACAGGATCTGTAGCTGCTCAGCTTTCATCACTCATGCCAGCAGCTGGCTCAAGTTATGGACCACCATTTCAAAATATCCCACTGACACGAGCATCAGAAAGTGCTGCACATGGTGGGAATGAAAATCCTACAGTGAAAGCAAAAGATCTGGAAGTATCTGATCCACCATTGGCTGATGTTCCTCAAACTGCAGGTAAAAGCTCTGAAATTGAAGAGGAGGTACATAAAACACCAGTAGAGAATCCAACCGCAACAATTGAGCAGGGACCCTGA	1674	0.4642	MDYSTYQQQQQQEQGYESSQNQAFDQSSQSYYGYNQQYDQQYAYYAGQGQGSSYAHPQFQQEHTSIHPPGVPIPPEQAQIQNPQFSNQDSGAALGAAMNPAAAAVAIAALSQLTQFAGNPPIGQSRYRGGSRGSRPFRRGGRGHFNPRGHAPYRGGGRGHGGGRHFPSYSSEFVPAATGGTSVAQQPSSSVSGPILAQVPDVTLHPPPCKFWCEICKVECNSSEIMEQHKNGKRHKKNLQVHEELQRRKAVNGQQNSQMPSSQLNLTAQVEKAPELKTEGCPADNMISVVMDDNLKNELDLQNNTGETSEVTADDPEENPREGSASRGHGFKRKMRGGRGGKYMRNNEGSRKKVEPPKPKQATSFICELCNVICESQVVYDSHLTGKKHQSNLKRVHGHQAMSQEPGPQAAPPANISAVSNSIDINALANSINSQVQHGVNDPQVLLAQLLMTVLSQAQASTAAAATTGSVAAQLSSLMPAAGSSYGPPFQNIPLTRASESAAHGGNENPTVKAKDLEVSDPPLADVPQTAGKSSEIEEEVHKTPVENPTATIEQGP	557

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci8g2321	557	MobiDBLite	consensus disorder prediction	49	65	-	-
	Prci8g2321	557	Pfam	Zinc-finger of C2H2 type	211	235	-	-
	Prci8g2321	557	Pfam	Zinc-finger of C2H2 type	365	389	-	-
	Prci8g2321	557	SUPERFAMILY	beta-beta-alpha zinc fingers	210	242	IPR036236	-
	Prci8g2321	557	MobiDBLite	consensus disorder prediction	305	359	-	-
	Prci8g2321	557	MobiDBLite	consensus disorder prediction	314	329	-	-
	Prci8g2321	557	SMART	ZnF_U1_5	362	396	IPR003604	GO:0003676\|GO:0008270
	Prci8g2321	557	SMART	ZnF_U1_5	210	242	IPR003604	GO:0003676\|GO:0008270
	Prci8g2321	557	MobiDBLite	consensus disorder prediction	1	31	-	-
	Prci8g2321	557	MobiDBLite	consensus disorder prediction	500	557	-	-
	Prci8g2321	557	MobiDBLite	consensus disorder prediction	118	192	-	-
	Prci8g2321	557	Gene3D	Classic Zinc Finger	204	244	-	-
	Prci8g2321	557	Gene3D	Classic Zinc Finger	344	395	-	-
	Prci8g2321	557	MobiDBLite	consensus disorder prediction	49	76	-	-
	Prci8g2321	557	PANTHER	OS06G0651300 PROTEIN-RELATED	6	440	-	-
	Prci8g2321	557	MobiDBLite	consensus disorder prediction	174	192	-	-
	Prci8g2321	557	SUPERFAMILY	beta-beta-alpha zinc fingers	351	397	IPR036236	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci8g2321	Prci-Chr8	29216741	29231642	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci8g2321	352	393	C2H2 Transcription Factor Family	AT5G61190	51.163	8.65e-07	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci8g2321	-		-	gmx:102666037	364.77