Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2313 ATGAGAAGGAGCAGAGAACTTCTTCGCCTCTATATTTCTCTGCGCGATCTCATTACAAAGTCACCATCTTCTTCTACTCGTTCTTTTCCTGGGCTTGTTATTCCCTTCAGTTCCTCTTTCTCCTCAACCCTAAATGGCGAGGACGACAAAAGATCACCCAAGTCTCAAAGGGATTTGTTGCTTCTGGAAAAATTTAGACTTCGAAAACTCAAAGGCTCTTCTACAACTTCAGAGAAGATAATGGAAAAGAATTTGAAAGACGAGGATGAACGCACTGAGGTAGTGACCAATTTTAAGAAGTTGGGTTTGTGTGAGAAGCTTATTGAGGTTTTGGAGAAACTAGGCGTGCTTGTTCCTTCTGAGATTCAATGTGCGGGAATTCCTGCTGTTTTGGAAGGAAAGAGCGTGTTGATGAGTTCACTATCTGGTCATGACAGGACTTTGGCCTACTTGTTACCTCTTATTCAGCTTTTGAGACAAGATAGAAAGTTGTCCCATTCAAATTTGAAGCATCCCCGGGCAGTTGTGCTTTGTGCCACAGAGGAGAATGCTGAACAGTGCTTTAATGCTGCAAAATATATCATCCGTCATGCAGAATTCAAGTCTACAAAGAATGATGCTTCACTAAATAATGAGCAGTCAGACGTTTCAATTGGCCTTGTAATCGGATCTCCTAGTGAGATTCTTCAATACATTGAAGAGGGAACGGTTATTCCTGAAGAAATAAGATATTTGGTAATAGATGATGCAGACATCATGTTTGATAGTGACCTTGGCGGTGAAATTCATAAGATTATCAGACAATTACCAGATTATACTTCAAATTTCGCTACGGGAGGATTGCAAACTGTTCTGGTCACTTCAACATTAACGGAGGTTTTGGGTGAAGAGTCTCCTGTTATAAAGCACCTGGAAAATAATCATGCTGGACATGTTTCTGCAATGTTGTTAGAAATGGATCTTACAGAAGTCTTTCAACTCACAGAATCCATGGATGCTTTGAGGCAAAAAATGACAGAGGCCATGAATTCCTTTCTCAAATGA 1044 0.4042 MRRSRELLRLYISLRDLITKSPSSSTRSFPGLVIPFSSSFSSTLNGEDDKRSPKSQRDLLLLEKFRLRKLKGSSTTSEKIMEKNLKDEDERTEVVTNFKKLGLCEKLIEVLEKLGVLVPSEIQCAGIPAVLEGKSVLMSSLSGHDRTLAYLLPLIQLLRQDRKLSHSNLKHPRAVVLCATEENAEQCFNAAKYIIRHAEFKSTKNDASLNNEQSDVSIGLVIGSPSEILQYIEEGTVIPEEIRYLVIDDADIMFDSDLGGEIHKIIRQLPDYTSNFATGGLQTVLVTSTLTEVLGEESPVIKHLENNHAGHVSAMLLEMDLTEVFQLTESMDALRQKMTEAMNSFLK 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2313 347 Gene3D - 297 346 - -
Prci8g2313 347 Gene3D - 64 296 IPR027417 -
Prci8g2313 347 SMART ultradead3 115 313 IPR014001 -
Prci8g2313 347 Pfam DEAD/DEAH box helicase 121 292 IPR011545 GO:0003676|GO:0005524
Prci8g2313 347 Pfam Poly-adenylate binding protein, unique domain 299 343 IPR002004 GO:0003723
Prci8g2313 347 SUPERFAMILY PABC (PABP) domain 292 343 IPR036053 GO:0003723
Prci8g2313 347 SMART poly_2 286 345 IPR002004 GO:0003723
Prci8g2313 347 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 40 292 - -
Prci8g2313 347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 293 IPR027417 -
Prci8g2313 347 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 96 124 IPR014014 GO:0003724
Prci8g2313 347 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 127 308 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2313 Prci-Chr8 29065689 29069061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2313 93 290 Eukaryotic Initiation Factors Gene Family AT3G19760 23.267 5.05e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2313 - - gmx:100800575 349.362