Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2289 ATGGGTTGTATATGTGATTTCTGTGGAGAACAGAGGTCCGTGGTGTATTGCCGTTCGGATGCTGCATGTTTGTGTTTGTCATGTGATCGAAATGTTCATTCTGCTAATGCCCTTTCAAGACGTCATTCAAGGACCCTAGTATGTGAGAGATGCAATTCACAACCTGCCACTATAAGGTGTACTGAAGAGAGGATTTCACTATGTCAGAATTGTGATTGGTTGGGCCACAGTACTTCCGCATCTTTGTCAACACATAAGAGGCAAACAATCAATTCCTATTCAGGATGCCCTTCGGCTGCAGAACTTTCTTCAATATGGTCATTTGTCTTAAACATTCCAACTATTGGTGAATCTTCATGTGAGCAAGAACTAGGTATGATGCGCATTAATGAGAACAGAAACAAGAGTGCTTGGGTTCCCCCTGAAATTCAGATAGGATCTGGTTCAGCTCAAGTAATTGATATACACAGCATGGATAAGTCTTGTGTTGGGCCATCTTTGATGCCCGAGTCAATCTCAGAGCCTCATGCTCTTGACCACCCGACTGGACCTGCCAATGAAAGTCTATCCAAGTTATACTATCCCGGTGCAAAAGGTTCTGGAGAATATGAAGATGATAACCTGTATGGTGACTTCGACATGGATGAAGTGGATCTAAATCTTGAGAACTACGAAGAACTTTTTGGTGTGGCTCTTAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGAATTGATAGTTTGTTTGGGGCAACAAAGGAAACGTCTGCTGGCAATTCCAATCATCAGGCTTCTGCTGAGGGTTTGTCAGTTGGACTGGTCAACGCAGTGCGCCCAGCATGCAGCAATGCAGCTTCTGCAGATTCCATGATAAGTACGAAAACTGAACCAATTCTCTGCTTTACCGGAAAGCAAGCGCAATCAAACCTTTCATTTTCTGGTGTTACTGGAGAGAGCAGCGGTGCCGACTATCAAGATTGCGGCGCTTCTTCAATGCTACTAACAGGGGAGCCTCCTTGGTGCCCTCCATGCCCGGAGAATTTCCTGAAAACTTCTAACCGCAGCGATGCCGTCATGCGTTACAAAGAAAAGAAGAAGATGCGCAAGTTTGAAAAAAGGGTGAGGTATGCCTCCCGCAAGGCAAGGGCCGATGTTCGAAGGCGTGTGAAGGGCAGGTTTGTTAAAGCCAGTGAAGCCTATGATTACGATCCTTTGACTCAAACGCGAAGCTGCTGA 1233 0.4526 MGCICDFCGEQRSVVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPATIRCTEERISLCQNCDWLGHSTSASLSTHKRQTINSYSGCPSAAELSSIWSFVLNIPTIGESSCEQELGMMRINENRNKSAWVPPEIQIGSGSAQVIDIHSMDKSCVGPSLMPESISEPHALDHPTGPANESLSKLYYPGAKGSGEYEDDNLYGDFDMDEVDLNLENYEELFGVALSHSEELFENGGIDSLFGATKETSAGNSNHQASAEGLSVGLVNAVRPACSNAASADSMISTKTEPILCFTGKQAQSNLSFSGVTGESSGADYQDCGASSMLLTGEPPWCPPCPENFLKTSNRSDAVMRYKEKKKMRKFEKRVRYASRKARADVRRRVKGRFVKASEAYDYDPLTQTRSC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2289 410 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Prci8g2289 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 398 - -
Prci8g2289 410 CDD Bbox1_BBX-like 47 90 - -
Prci8g2289 410 SMART bboxneu5 48 90 IPR000315 GO:0008270
Prci8g2289 410 SMART bboxneu5 4 47 IPR000315 GO:0008270
Prci8g2289 410 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Prci8g2289 410 Pfam B-box zinc finger 46 89 IPR000315 GO:0008270
Prci8g2289 410 ProSiteProfiles Zinc finger B-box type profile. 4 47 IPR000315 GO:0008270
Prci8g2289 410 Pfam CCT motif 353 395 IPR010402 GO:0005515
Prci8g2289 410 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2289 Prci-Chr8 28176898 28188233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2289 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 58.057 7.57e-153 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Prci8g2289 zf-B_box 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2289 - - gmx:100796748 615.15