Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2220 ATGTCTTCCTCATCACCATCATCGTCTTCTTTTTCTTCTTCTTCTTCACCTTCAATCCCAGATGACACCACCAACCATGGCAATAATAATAATAATAGTGGTGGTGGCGATTCTGATCCTGGCCCTAGTACTAGTCGACGAAGAAGACGACGTCCTATGAATGAGGTTTTGCCTGAACCTTTTCTTGAAGCTTTAGCCATCCAAATAGCCATTGAAGCTTCTCACACTCATGGACGTCTGGCGGCTGCTCCTTCCATTGCCAATCTCTTTCAGGTTTGTTCTACATGGCGAGCCATTTCGCGCTCGGATCACCTGTGGCAGCGGCTTACCCAAAGCATATGGCGTCGAACCCATAGAATATTCGACACGTGGCATGAGGAGTTCAATTTTTGGCATCGAACGGCAAGCAATTTCGTCACAGGCAGATACGCCCACACCTCCCTACGCTGTCCTTTTGACTTAGACCGACCCCATCTATGCCGTTGCCTCACACTCTCCGACAACCACCTTGCTTGTGGATTCGCCGACGGCACCGTCCGCCTCTACGATCTCCAAACACGCGCCCATGTCATCACCTTCCGGCCCCACCACGTGGACGTGTTAGGTCCTTTCTCAAGATCCGTGTCCGGAATCATCATCACAAACTCCACACTGGTCTTTGCCACACTGGACGGAAACATCTATGCTGCAGACATCAACGGGCCACCCGATACCCACATGGCCCGACCCGGAGACGTTCTGAACAACGGCGTCTTGGTGGAGTTTGCTGGCAGCGGGCGGTGGTGGGTGGGCCTTTTCGCAGGCGTCCCTCGCCGAGCATTCCGTGTCTGGGACGCGCGTGGCGAACAACCCGATTACATTGGTGGGTCCTTGACCGACCCGGATTCCGTCCAGGGCTGGCACATGCTGACTGATGTAACTGAACCAGTCGGTCGCTTGCGTGTCACCACTCGCGAGCTGGCCGTGGCATGCACGCGTTCGAGACTCGTAGTTTTCGACTTGAGGAACCCAGGGGTTTTATTGCGTGAGCTTGTGTCCAGAGTGGGCTTCATTGTGACCTCGCTGGACGTGAGCCACGAGGCGTTCGTTATCGTGGAGAGTAGGGGTCGTGCTAGAGTGCGCCGGGCGAGCACCTTCGAGCCTGAATGTGAAGAATTTATGGTGACGGGAACGCCGCTGAGGGGGATGATCGGATGCATGAACTTGGGTTACGTGCTAATATGCGCCGGTGGTCATGTTAGACTGTGGGACGTAGAGCCTGGAGAGGCACATCTGGGCTTGACCATAAACGAAAGAATAGGATCGGGTATGGCAATGGCTGCCAACGACAGACACGTGGTGGTGTCATGTAGAGACACGTCAATACACCTCTGGGATTTTGGTGTACAGTAG 1392 0.5417 MSSSSPSSSSFSSSSSPSIPDDTTNHGNNNNNSGGGDSDPGPSTSRRRRRRPMNEVLPEPFLEALAIQIAIEASHTHGRLAAAPSIANLFQVCSTWRAISRSDHLWQRLTQSIWRRTHRIFDTWHEEFNFWHRTASNFVTGRYAHTSLRCPFDLDRPHLCRCLTLSDNHLACGFADGTVRLYDLQTRAHVITFRPHHVDVLGPFSRSVSGIIITNSTLVFATLDGNIYAADINGPPDTHMARPGDVLNNGVLVEFAGSGRWWVGLFAGVPRRAFRVWDARGEQPDYIGGSLTDPDSVQGWHMLTDVTEPVGRLRVTTRELAVACTRSRLVVFDLRNPGVLLRELVSRVGFIVTSLDVSHEAFVIVESRGRARVRRASTFEPECEEFMVTGTPLRGMIGCMNLGYVLICAGGHVRLWDVEPGEAHLGLTINERIGSGMAMAANDRHVVVSCRDTSIHLWDFGVQ 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2220 463 SUPERFAMILY Tricorn protease domain 2 161 460 - -
Prci8g2220 463 SUPERFAMILY F-box domain 83 168 IPR036047 GO:0005515
Prci8g2220 463 Gene3D - 54 135 - -
Prci8g2220 463 Gene3D - 136 462 IPR015943 GO:0005515
Prci8g2220 463 PANTHER WD40 REPEAT PROTEIN 12, 37 18 383 - -
Prci8g2220 463 MobiDBLite consensus disorder prediction 1 55 - -
Prci8g2220 463 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2220 Prci-Chr8 26307729 26315021 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Prci8g2220 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2220 - - qsa:O6P43_014471 503.442